Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca02g02498 ATGGATCCTTCTGAGCAAATTTCTGAAGAATGGAGTTCTCTTAGTGGATTCTACACAGCTGAGGAAGCTGACTTTATGAGCCAGTTTCTTGATAACTGCTCACTCCCTGAGAACCTGTGTGGAAATTTCAATTTTGGAATTCCATCTGCCATATGGCCTGGCCATGAATCAACAATAGTGAGCGTCACAGGCATCAATGGAACTCCATATTTTCCTGCAAATGCTGATAATAGTAATACTAACTATTTATGTTTTTTACAAGGAAGTAGCTCCACTTCTGATAATAGCATTATATTTCCTACTACAAGTGGTAATAACTACTGCTTCAATGATCCTTTATCCAACATTGGCAACATGTCCATGGGTTTTTCCTCGGGGGATGCCAAGTTTAGCCCATATAATGTTCATAAGAGTGACTGCCAACAGATAAATGAAAACACTGATGAAGTGTTAGATCTAGAGGTTATTGCTGACCAGAATTTGCAGGATCACCAAGAATGTGAAGTAGTAGTTTCTGAAGCAGCAGAAGAGGATATAAACACCAATGTGGAGATGTCAGGGAAAAGATCTAGGGGCTCAATGCAGGGGAGGAAGAGCAAGAAAAATGTTAAATCTACGAAGAAAACAAAATCTGATTCTACAAGTAACTTTGAAGAGGGTAGAAGTCCTGGTGTTCAGGGTCAGAGCTTGAGCAGTAGCTGCTCAGAGGATGATGAGTCCAATGCTTCTCAGGAGCTAAATGGAGGAGGAACTTCAAGTTTGAGCCTGGAGGATTCTACAACTCTCAAGTTAAAGGGGAAAAAATCCACATCTAATAGAGGTTCTGCTACTGATCCACAGAGTGTATATGCAAGAAGAAGAAGAGAAAGAATAAATGAAAGGTTGAGAATCCTACAAAACCTTGTCCCCAATGGAACCAAGGTGGATATCAGCACCATGCTTGAGGAAGCTGTCCAATATGTGAAGTTTTTGCAGCTCCAAATTAAGCTTCTGAGCTCTGATGATCTTTGGATGTACGCTCCTATAGCTTACAATGGAATGAACATTGGATTAGACCTCAATATTACCCCAACCAAACAACCATAA 1086 0.4042 MDPSEQISEEWSSLSGFYTAEEADFMSQFLDNCSLPENLCGNFNFGIPSAIWPGHESTIVSVTGINGTPYFPANADNSNTNYLCFLQGSSSTSDNSIIFPTTSGNNYCFNDPLSNIGNMSMGFSSGDAKFSPYNVHKSDCQQINENTDEVLDLEVIADQNLQDHQECEVVVSEAAEEDINTNVEMSGKRSRGSMQGRKSKKNVKSTKKTKSDSTSNFEEGRSPGVQGQSLSSSCSEDDESNASQELNGGGTSSLSLEDSTTLKLKGKKSTSNRGSATDPQSVYARRRRERINERLRILQNLVPNGTKVDISTMLEEAVQYVKFLQLQIKLLSSDDLWMYAPIAYNGMNIGLDLNITPTKQP 361
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca02g02498 361 MobiDBLite consensus disorder prediction 178 286 - -
Cca02g02498 361 Gene3D - 278 338 IPR036638 GO:0046983
Cca02g02498 361 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 275 324 IPR011598 GO:0046983
Cca02g02498 361 Pfam Helix-loop-helix DNA-binding domain 285 325 IPR011598 GO:0046983
Cca02g02498 361 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 273 340 IPR036638 GO:0046983
Cca02g02498 361 SMART finulus 281 330 IPR011598 GO:0046983
Cca02g02498 361 MobiDBLite consensus disorder prediction 216 279 - -
Cca02g02498 361 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 8 357 - -
Cca02g02498 361 PANTHER TRANSCRIPTION FACTOR BHLH54 8 357 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca02g02498 Cca-Chr2 46153370 46155058 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca02g02498 10 355 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G14760 39.142 1.37e-60 196
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Cca02g02498 HLH 8.2e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca02g02498 - - ccaj:109795401 669.463