Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca02g02488 ATGGGTGGCGTTTATTGCATGATTCTTTGTTTTGTATTTCTAAAATTCATATCTGAAGCCAGTGCCCAGCCAGTCAGCTTTGTCTGTGATAACAGCAGAGGGAACTACACAGCTAATAGCACATATGAGTCGAATCTGAACACCCTTTTAACCTCTCTTTCTTCTAACACACAAATTGACTACGGTTTCTACAACTTCTCCTATGGCCAAAACACAGACAAAGTCTACGCCATTGGACACTGCAGAGGAGATGTTAAGCCGGAGGAATGCCGCAGTTGCCTCAATAATTCCAGGGTCGATCTCAAACAGCGCTGTCCAAACCAAAAGGAGGCAATTGAGTGGTTTGATAAATGCATGTTGCGCTACTCGAACCGCACAATATTTGGCATCGAGCAAGATGATCCACCTATTATCCTGTATAACGAAAACAGCGCAACACAAGTGGATGAGTTCAATCAAATTCTCGGAAACTTATTGAAGAACCTCAAAGACACAGCGGCAGCAGGTGACTCTCGTCGTAAGTACGCTGCGGATAATGCAACTTTTTCATATTTTCAAAACATTTACGGTCTAGTGCAGTGCACCCCTGATTTGTCTCAGCAACAATGCACTGACTGCTTGGAAGGACTTATTTCACGGATCCCATATTGCTGTAATGACAAAGTAGGTGCTACAGTTATTACACTCAGTTGTAATATTAGATATGAAACTCACAGATTCTACGAATCTGATGAACAACATTCAACACCGCCTCCTCCATCCACCAATAGCACTTCCTCAGGAGAGAGTGACAACAAAGTACCGATTGTCATTGCTGTAATTGTGCCTACTGTTGTTGTTGTTTTGCTCCTTTCTCTCTGCTTATATTCAAGGAGGTGGAAGGCAATGAAAAATCTTGCAGGTGAAGGCAAAGAAGATGAAGATGAGGATGAAATTAAAATTGCTGAGTCATTACAATTCAACTTGGACACAATACGAGTTGCTACAGAAGACTTCTCTGATTCTAATAAACTTGGACAAGGTGGATTTGGAGCTGTTTACCGGGGTAAGCTCTCCAACGGGCAGATGATTGCAGTCAAAAGATTGTCAAGAGATTCGCGCCAAGGAGATACGGAATTTAAGAATGAAGTGCTTTTAGTGGCCAAGCTTCAGCACCGAAATTTAGTTAGACTACTTGGTTTCTGCTTGGAAGGAAGAGAGAGGCTACTTGTCTATGAATTTGTTCCTAATAAAAGTCTTGATTTTTTCATATTTGGTACGGGTAAATGA 1269 0.4169 MGGVYCMILCFVFLKFISEASAQPVSFVCDNSRGNYTANSTYESNLNTLLTSLSSNTQIDYGFYNFSYGQNTDKVYAIGHCRGDVKPEECRSCLNNSRVDLKQRCPNQKEAIEWFDKCMLRYSNRTIFGIEQDDPPIILYNENSATQVDEFNQILGNLLKNLKDTAAAGDSRRKYAADNATFSYFQNIYGLVQCTPDLSQQQCTDCLEGLISRIPYCCNDKVGATVITLSCNIRYETHRFYESDEQHSTPPPPSTNSTSSGESDNKVPIVIAVIVPTVVVVLLLSLCLYSRRWKAMKNLAGEGKEDEDEDEIKIAESLQFNLDTIRVATEDFSDSNKLGQGGFGAVYRGKLSNGQMIAVKRLSRDSRQGDTEFKNEVLLVAKLQHRNLVRLLGFCLEGRERLLVYEFVPNKSLDFFIFGTGK 422
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca02g02488 422 Pfam Salt stress response/antifungal 145 237 IPR002902 -
Cca02g02488 422 Pfam Salt stress response/antifungal 29 124 IPR002902 -
Cca02g02488 422 SUPERFAMILY Protein kinase-like (PK-like) 316 421 IPR011009 -
Cca02g02488 422 MobiDBLite consensus disorder prediction 247 263 - -
Cca02g02488 422 Gene3D - 137 240 IPR038408 -
Cca02g02488 422 Gene3D - 23 126 IPR038408 -
Cca02g02488 422 PANTHER CYSTEINE-RICH RECEPTOR-KINASE-LIKE PROTEIN 5 420 - -
Cca02g02488 422 ProSiteProfiles Gnk2-homologous domain profile. 133 240 IPR002902 -
Cca02g02488 422 ProSiteProfiles Gnk2-homologous domain profile. 24 127 IPR002902 -
Cca02g02488 422 MobiDBLite consensus disorder prediction 242 263 - -
Cca02g02488 422 ProSiteProfiles Protein kinase domain profile. 332 422 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca02g02488 422 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 5 420 - -
Cca02g02488 422 Pfam Protein tyrosine and serine/threonine kinase 335 417 IPR001245 GO:0004672|GO:0006468
Cca02g02488 422 ProSitePatterns Protein kinases ATP-binding region signature. 338 360 IPR017441 GO:0005524
Cca02g02488 422 Gene3D Phosphorylase Kinase; domain 1 295 407 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca02g02488 Cca-Chr2 46033615 46036973 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca02g02488 33 422 Receptor kinase-like Gene Family AT4G21410 46.860 4.48e-112 342
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Cca02g02488 Stress-antifung 6.5e-15 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca02g02488 - - var:108324785 516.924