Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca02g02487 ATGGCCAGTTTTGCAGGAACCACACAGAAGTGCATGGCATGTGAGAAAACTGTCTACCTTGTTGATAAGCTAACTGCTGATGGCCGTATCTTTCATAAGGCCTGCTTCCGATGCCACCATTGCCGCAGTACCCTTAAGCTTAGCAACTACTGTTCTTTTGAGGGGGTGCTCTACTGCAGACCTCACTATGATCAACTCTACAAGAGAACTGGCAGCCTGGACAAAAGCTTCGAAGGAACACCAAAAATTCAGAAACCAGAGAAACCGATCACTGATAATGAGAATACAAAGGTGCTCGCAAACGTGTTCTTGGGCACCAGAGATAAGTGTGTGTGTTGCAAAAAGACAGTGTATCCCACTGAGAGGATTACTATTAATGGGACTCCATACCACAAGAGCTGCTTCAAGTGCACCTATGGAGGTTGTACTATAAGCTCATCAAACTTCATCACACACGAGGGAAAGCTGTACTGCAAGCATCACCACATTCAACTCTTCAAGGAGAAGGGCAATTACAGTCAGCTCGAGAATGACCAAGTTGCTACCACGGATGTCTCTGCTTAA 564 0.4574 MASFAGTTQKCMACEKTVYLVDKLTADGRIFHKACFRCHHCRSTLKLSNYCSFEGVLYCRPHYDQLYKRTGSLDKSFEGTPKIQKPEKPITDNENTKVLANVFLGTRDKCVCCKKTVYPTERITINGTPYHKSCFKCTYGGCTISSSNFITHEGKLYCKHHHIQLFKEKGNYSQLENDQVATTDVSA 187
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca02g02487 187 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 3 36 - -
Cca02g02487 187 ProSitePatterns LIM zinc-binding domain signature. 11 45 IPR001781 -
Cca02g02487 187 Pfam LIM domain 110 165 IPR001781 -
Cca02g02487 187 Pfam LIM domain 11 65 IPR001781 -
Cca02g02487 187 ProSiteProfiles LIM domain profile. 9 69 IPR001781 -
Cca02g02487 187 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 136 175 - -
Cca02g02487 187 PANTHER OS06G0237300 PROTEIN 1 182 IPR045268 GO:0051015
Cca02g02487 187 Gene3D Cysteine Rich Protein 5 75 - -
Cca02g02487 187 Gene3D Cysteine Rich Protein 105 174 - -
Cca02g02487 187 ProSiteProfiles LIM domain profile. 108 168 IPR001781 -
Cca02g02487 187 PANTHER LIM DOMAIN-CONTAINING PROTEIN WLIM1 1 182 - -
Cca02g02487 187 SMART lim_4 10 62 IPR001781 -
Cca02g02487 187 SMART lim_4 109 161 IPR001781 -
Cca02g02487 187 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 102 135 - -
Cca02g02487 187 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 37 77 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca02g02487 Cca-Chr2 46017424 46018899 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LIM Cca02g02487 LIM 1e-10 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca02g02487 K09377 - gmx:100306027 365.54
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca02g02487 02 46017424 46018899 Cca02g02487 02 46017424 46018899 ECH