Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca02g02482 ATGTCTCTATCGCCGCCCCATTTCCACGACGAGCACGACGAAGCCATCGGCTCCCTCCTCCTGGCAGAGAGGCACCACATGCCGGAAAACGACTACCTCCGGCGGTGCCGCGAGCGCTCCGTGGACGTGAGCGGGCGGGTGGAGGCCGTGAACTGGATCTTAAAGGTGCAGGCATTCTACGAGTTCCGTCCCGTGACGGCGTTTCTCTCCGTCAACTATTTGGACCGTTTCCTCTCGTGCTGTTCTCTTCCGAGTGAGAGTGGGTGGGCGTTTCAGCTTCTATCCGTCGCATGCCTCTCTCTCGCTGCCAAAATGGAAGAGTCTCATGTCCCCTTCTTACTGGACCTCCAATTGTTCCACCCCACCTTCATCTTCCACCCCAAAACAGTCCAAAGAATGGAGCTTTGGGTCATGACTCATCTCAAATGGAGACTCCGCTCCGTTACGCCCTTCGATTACCTTCATTATTTCATCTCCAACCTCCCCTCCTCATCTTCTACCATCGATCACTTCTCCACTGCCTCCAACCTCATTCTCAGCACCACCCGTGTGCATCACTTCTTGGCCTTTGCGCCCTCCACCGTCGCTGCCGCCGCCGTCCTCTGCTCCGCCGGTTATAACGCCCAACAATTGCCGCTCTCTTTTCATCACAGACTAAACCAAGAAATGGTGAGATGCTGTCACCAACTAATGGAGGAGTACGTGCTGGACACGTGTCTCGCATCCACTTCCACCATCAAACCCACAATAGCCGAACCCACGTCGCCGTCAAGCCCCGTCGGCGTCCTCGACGCCGCCACCTGTGCCAGCTGTGACACCCCTTCCGACAGAAATTTCGCTGCCTCAACCCACCAACAAGCCGAGCCGCCAAATAAACGGCCCCGACCCTCTACTCCCGATGTACCCCAGCGCTAG 915 0.5705 MSLSPPHFHDEHDEAIGSLLLAERHHMPENDYLRRCRERSVDVSGRVEAVNWILKVQAFYEFRPVTAFLSVNYLDRFLSCCSLPSESGWAFQLLSVACLSLAAKMEESHVPFLLDLQLFHPTFIFHPKTVQRMELWVMTHLKWRLRSVTPFDYLHYFISNLPSSSSTIDHFSTASNLILSTTRVHHFLAFAPSTVAAAAVLCSAGYNAQQLPLSFHHRLNQEMVRCCHQLMEEYVLDTCLASTSTIKPTIAEPTSPSSPVGVLDAATCASCDTPSDRNFAASTHQQAEPPNKRPRPSTPDVPQR 304
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca02g02482 304 Pfam Cyclin, C-terminal domain 148 245 IPR004367 -
Cca02g02482 304 ProSitePatterns Cyclins signature. 46 77 IPR006671 -
Cca02g02482 304 SUPERFAMILY Cyclin-like 7 145 IPR036915 -
Cca02g02482 304 Pfam Cyclin, N-terminal domain 19 145 IPR006671 -
Cca02g02482 304 PANTHER CYCLINS 10 294 IPR039361 -
Cca02g02482 304 SMART Cyclin_C_2 148 271 IPR004367 -
Cca02g02482 304 SUPERFAMILY Cyclin-like 150 235 IPR036915 -
Cca02g02482 304 SMART cyclin_7 51 139 IPR013763 -
Cca02g02482 304 MobiDBLite consensus disorder prediction 274 304 - -
Cca02g02482 304 Gene3D - 18 227 - -
Cca02g02482 304 Gene3D - 29 146 - -
Cca02g02482 304 MobiDBLite consensus disorder prediction 274 291 - -
Cca02g02482 304 CDD CYCLIN 45 135 IPR013763 -
Cca02g02482 304 PANTHER CYCLIN-D2-1-LIKE 10 294 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca02g02482 Cca-Chr2 45968076 45969718 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca02g02482 14 238 Core Cell Cycle Gene Families AT1G70210 44.872 1.38e-64 205
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca02g02482 K18810 - gmx:100776178 435.261
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca02g02482 02 45968076 45969718 Cca02g02482 02 45968076 45969718 ECH