Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca02g02466 ATGGAGATGAAGAAAATGAGCAATGAGACGAACCTCCAAGTGACATTTTCGAAGGGTCGCAGTGGGCTATTCAAGAAAGCGAGTGAACTTTGCATTCTGTGTGGCGCTGACGTGGCACTGATTGTGTTCTCTCCTGGGGAGAAGGTCTTCTCCTTCGGCCATCCGAACGTGGATGTGGTGATAGATCGGTATCTGGCGCCAGGCCCACTGCCAAACTCAAGCACCATGCACTTCATTGAGGCCCACCGCATTGCCAATGTGCGTGGCGAGGACTTGGCCCATTTGAAGAAAGCCATACGGGCCCAACTTTGGTGGGCCTCCCCGATTGAGGAGATGACTAGGGCCCAATTGGAGCAGTACAAGGTAGCGTTGGAGGAGCTCAAGAAGCGCGTAGCATGCCTTGTTGATAGGGCTATGCTTCAGAGTATTCCAAACCCTACTCATCAGCTTTTCCTTTTTCCAGGGGCTTCTTCCTTTCCCAATCCCAACCTTGTGCATCAACCACCCATGCTTCACAACTATACGAATCGCCACCATCGCTTCAATAACATGGGATTCCCAGGATATGGATATGGATCTACCGCTGCTTTCTTTTGA 597 0.5109 MEMKKMSNETNLQVTFSKGRSGLFKKASELCILCGADVALIVFSPGEKVFSFGHPNVDVVIDRYLAPGPLPNSSTMHFIEAHRIANVRGEDLAHLKKAIRAQLWWASPIEEMTRAQLEQYKVALEELKKRVACLVDRAMLQSIPNPTHQLFLFPGASSFPNPNLVHQPPMLHNYTNRHHRFNNMGFPGYGYGSTAAFF 198
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca02g02466 198 ProSiteProfiles MADS-box domain profile. 1 56 IPR002100 GO:0003677|GO:0046983
Cca02g02466 198 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 5 52 IPR002100 GO:0003677|GO:0046983
Cca02g02466 198 SMART madsneu2 1 55 IPR002100 GO:0003677|GO:0046983
Cca02g02466 198 Gene3D - 8 72 IPR036879 GO:0003677|GO:0046983
Cca02g02466 198 SUPERFAMILY SRF-like 1 73 IPR036879 GO:0003677|GO:0046983
Cca02g02466 198 PRINTS MADS domain signature 18 33 IPR002100 GO:0003677|GO:0046983
Cca02g02466 198 PRINTS MADS domain signature 33 54 IPR002100 GO:0003677|GO:0046983
Cca02g02466 198 Coils Coil 110 137 - -
Cca02g02466 198 PANTHER MADS BOX PROTEIN 2 84 - -
Cca02g02466 198 PANTHER MADS BOX PROTEIN 88 146 - -
Cca02g02466 198 PANTHER AGAMOUS-LIKE MADS-BOX PROTEIN AGL62 2 84 - -
Cca02g02466 198 PANTHER AGAMOUS-LIKE MADS-BOX PROTEIN AGL62 88 146 - -
Cca02g02466 198 CDD MADS_MEF2_like 2 65 IPR033896 GO:0000977|GO:0045944
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca02g02466 Cca-Chr2 45814131 45814727 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca02g02466 1 145 Type I MADS-box Gene Family AT5G60440 49.102 2.42e-44 147
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Cca02g02466 SRF-TF 3.1e-22 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca02g02466 02 45814131 45814727 Cca02g02466 02 45814131 45814727 ECH