Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca02g02465 ATGTCCAACTCCAACTCCAACCCCAACCCGAAGAAGAGCCGTGGCCGCCAAAAGATCGAGATGAAGAAGATGAGCAACGAGAGCAATCTCCAAGTCACGTTTTCGAAGCGTCGCAGCGGGCTTTTCAAGAAGGCGAGCGAGCTCTGCACTCTCTGTGGCGCTGACGTGGCACTGGTTGTGTTCTCTCCCGGTGACAAGGTGTTCTCCTTCGGGCACCCCAACGTGGACGCGGTCATAGACCGTTATCTGGCGCGGGCCCCACAGCCCAACACGGGCACCATGCACTTCATCGAGGCCCACCGCGTGGCGAACGTGCGTGACCTGAACGTGCAGCTGACTCAGATCAACGGGCAGCTGGAGTCGGAGAGGAAGCGGGCCGATGAGCTGGCCCGGCTGAAGAGGGCGACTCAGGCCCAGCTGTGGTGGGCCTCTCCGATCGATGACATGAGCCGGGTCCAGCTGGACCAGTACAAGGTGGCTCTGGAGGAGCTGAAGAAGCACGTTGCACGCCTTGCTGATAGGGCTATGCTTCAGAGTGCTGCAAACCCTTCTCATCATCATCATCACTTTTTCCCTGGGGCTTCCTCCTCTTCCAACGTTGTGAATCAGCCACATAACCCTCAGATGTTCCCGCCACAGATGATTCAGCCTTCCATGCTTCAGAACTACATGTTTCCTGATGGGACCATCATGCACCCCAATGGCTTCAACAACATGGGATTTGGACCTGGCAATGGTGGTTTCTTTTGA 750 0.5693 MSNSNSNPNPKKSRGRQKIEMKKMSNESNLQVTFSKRRSGLFKKASELCTLCGADVALVVFSPGDKVFSFGHPNVDAVIDRYLARAPQPNTGTMHFIEAHRVANVRDLNVQLTQINGQLESERKRADELARLKRATQAQLWWASPIDDMSRVQLDQYKVALEELKKHVARLADRAMLQSAANPSHHHHHFFPGASSSSNVVNQPHNPQMFPPQMIQPSMLQNYMFPDGTIMHPNGFNNMGFGPGNGGFF 249
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca02g02465 249 PANTHER MADS BOX PROTEIN 13 186 - -
Cca02g02465 249 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 23 70 IPR002100 GO:0003677|GO:0046983
Cca02g02465 249 Gene3D - 93 187 - -
Cca02g02465 249 Coils Coil 154 174 - -
Cca02g02465 249 SUPERFAMILY SRF-like 15 93 IPR036879 GO:0003677|GO:0046983
Cca02g02465 249 Coils Coil 105 139 - -
Cca02g02465 249 MobiDBLite consensus disorder prediction 1 28 - -
Cca02g02465 249 PRINTS MADS domain signature 16 36 IPR002100 GO:0003677|GO:0046983
Cca02g02465 249 PRINTS MADS domain signature 36 51 IPR002100 GO:0003677|GO:0046983
Cca02g02465 249 PRINTS MADS domain signature 51 72 IPR002100 GO:0003677|GO:0046983
Cca02g02465 249 SMART madsneu2 14 73 IPR002100 GO:0003677|GO:0046983
Cca02g02465 249 ProSiteProfiles MADS-box domain profile. 14 74 IPR002100 GO:0003677|GO:0046983
Cca02g02465 249 PANTHER AGAMOUS-LIKE MADS-BOX PROTEIN AGL62 13 186 - -
Cca02g02465 249 Gene3D - 26 92 IPR036879 GO:0003677|GO:0046983
Cca02g02465 249 CDD MADS_MEF2_like 15 83 IPR033896 GO:0000977|GO:0045944
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca02g02465 Cca-Chr2 45798894 45799945 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca02g02465 11 198 Type I MADS-box Gene Family AT5G60440 54.974 1.21e-63 199
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Cca02g02465 SRF-TF 9e-25 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca02g02465 - - gmx:100780445 320.472
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca02g02465 02 45798894 45799945 Cca02g02465 02 45798894 45799945 ECH