Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca02g02464 ATGAAGAAAATGAGCAACGAGAGCAACTTGCAAGTGACGTTTTCGAAGCGTCGCAGTGGAGTTTTCAAGAAAGCGAGTGAGCTTTGCACTCTATGCGGCACTGACGTGGCTCTAATTATGTTCTCTCCGAGTGACAAGGTCTTCTCCTTTGGCCACCCTAGCGTGGATGCTGTGATAGAGCGGTATCTCGCACGGGCCCCATTGCCAAACTCAAGCACCATGCAGTTCATCGAGGCTCACCGCACTGCCAACGTGAATGAGCTTAACACACAGCTCACTCAGATCAACATCCAACTCGACGCTGAAAGGAAGCGTGCCGAGGAGTTGGCTCGTCTGAAAAAGGTTGTTCAAGCCCAAATGTGGTGGGCCTCGCCGATTGAGGAGATGAGTACAGCCCAATTGGAGCAGTTCAAGCTGGTGTTGGAGGAGCTGAAGAAACACGTTGCGTGCCTTGTTGATAGAGTTATGCTTCAGAGTGTTGCAAACCCTGCTCATCAGTTTTTCCCTGGAGCATCTTCCTCTCCCAACCTTGTGCATCAACCACAGCCACCCCAGGAGTTCCCCCAACAGTTCATTCAACCACCCATGCTTCAAAACTATATGTTTTCTAATAGGACCATGACGCATCAGTATCACCATGGATTCAATAACACGGGATCCGGAGGATATGGATCTATTGGTGGTTTCTTTTGA 693 0.4964 MKKMSNESNLQVTFSKRRSGVFKKASELCTLCGTDVALIMFSPSDKVFSFGHPSVDAVIERYLARAPLPNSSTMQFIEAHRTANVNELNTQLTQINIQLDAERKRAEELARLKKVVQAQMWWASPIEEMSTAQLEQFKLVLEELKKHVACLVDRVMLQSVANPAHQFFPGASSSPNLVHQPQPPQEFPQQFIQPPMLQNYMFSNRTMTHQYHHGFNNTGSGGYGSIGGFF 230
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca02g02464 230 Gene3D - 6 73 IPR036879 GO:0003677|GO:0046983
Cca02g02464 230 PRINTS MADS domain signature 16 31 IPR002100 GO:0003677|GO:0046983
Cca02g02464 230 PRINTS MADS domain signature 31 52 IPR002100 GO:0003677|GO:0046983
Cca02g02464 230 Coils Coil 85 119 - -
Cca02g02464 230 CDD MADS_MEF2_like 1 63 IPR033896 GO:0000977|GO:0045944
Cca02g02464 230 PANTHER MADS BOX PROTEIN 4 177 - -
Cca02g02464 230 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 3 50 IPR002100 GO:0003677|GO:0046983
Cca02g02464 230 Gene3D - 74 166 - -
Cca02g02464 230 SUPERFAMILY SRF-like 1 69 IPR036879 GO:0003677|GO:0046983
Cca02g02464 230 SMART madsneu2 1 53 IPR002100 GO:0003677|GO:0046983
Cca02g02464 230 ProSiteProfiles MADS-box domain profile. 1 54 IPR002100 GO:0003677|GO:0046983
Cca02g02464 230 PANTHER AGAMOUS-LIKE MADS-BOX PROTEIN AGL62 4 177 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca02g02464 Cca-Chr2 45769217 45769909 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca02g02464 1 174 Type I MADS-box Gene Family AT5G60440 51.412 7.70e-56 178
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Cca02g02464 SRF-TF 1.7e-23 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca02g02464 - - gmx:100794751 283.108
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca02g02464 02 45769217 45769909 Cca02g02464 02 45769217 45769909 ECH
Cca06g02024 06 35467446 35468117 Cca02g02464 02 45769217 45769909 PCT