Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca02g02463 ATGTGGAAGAATAAAAAGTCGAGCCTGGGTCGGCAAAAGATCCCAATTGAGAAAATACCAAAGAAGAGTCACTTGCAAGTTACATTCTCTAAGCGTCGATCAGGGTTGTTCAAGAAAGCGAGCGAGCTATGCACCCTTTGCGGTGTTGAGATCGCAATCCTAGTTTTCTCTCCTGCGGACAAGGCCTTCTCTTTCGGCCACCCAGAAGTTGAGTCCCTCATCGATCGTTACACCACGCGGAACCCTCCGCAGGAGTCCAGCGCGCACCACCTGGTGGAGGCGCACCGTAACGCCAATGTTCGCGATCTCAACATGCAGCTGACGCAGCTTTTTAACCACTTGGAGATGGAGAAGAAGCGCGGGGAGGATCTGGATCACGTGCGCAAGGCTAGGCAGAGACAGTTTTGGTGGGAGACTCCCGTCGATGACCTTGGATTGCATCACTTGCTTCAACTCAAGCTTTCTATTGAGGACCTCAAGAACAACATTCAAAACCATGCTACCAATTTCATTCTCGATCATTCTTCCTCCCTTCTTGGCCCTAACAATGCCCTTCCCCCAATTGGACGCTCCGCTGCTTCCTCGCTTCATGTTCATCCCAATGCGCATTACCTCGCCTTTCCCACCGCCTATCTTTAA 639 0.5117 MWKNKKSSLGRQKIPIEKIPKKSHLQVTFSKRRSGLFKKASELCTLCGVEIAILVFSPADKAFSFGHPEVESLIDRYTTRNPPQESSAHHLVEAHRNANVRDLNMQLTQLFNHLEMEKKRGEDLDHVRKARQRQFWWETPVDDLGLHHLLQLKLSIEDLKNNIQNHATNFILDHSSSLLGPNNALPPIGRSAASSLHVHPNAHYLAFPTAYL 212
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca02g02463 212 Gene3D - 89 174 - -
Cca02g02463 212 CDD MADS_MEF2_like 10 77 IPR033896 GO:0000977|GO:0045944
Cca02g02463 212 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 18 65 IPR002100 GO:0003677|GO:0046983
Cca02g02463 212 SUPERFAMILY SRF-like 10 90 IPR036879 GO:0003677|GO:0046983
Cca02g02463 212 SMART madsneu2 9 68 IPR002100 GO:0003677|GO:0046983
Cca02g02463 212 PANTHER AGAMOUS-LIKE MADS-BOX PROTEIN AGL62 8 178 - -
Cca02g02463 212 Gene3D - 21 88 IPR036879 GO:0003677|GO:0046983
Cca02g02463 212 PANTHER MADS BOX PROTEIN 8 178 - -
Cca02g02463 212 Coils Coil 149 169 - -
Cca02g02463 212 ProSiteProfiles MADS-box domain profile. 9 69 IPR002100 GO:0003677|GO:0046983
Cca02g02463 212 PRINTS MADS domain signature 11 31 IPR002100 GO:0003677|GO:0046983
Cca02g02463 212 PRINTS MADS domain signature 31 46 IPR002100 GO:0003677|GO:0046983
Cca02g02463 212 PRINTS MADS domain signature 46 67 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca02g02463 Cca-Chr2 45765662 45766300 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca02g02463 8 170 Type I MADS-box Gene Family AT2G24840 50.000 5.51e-54 172
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Cca02g02463 SRF-TF 8.1e-23 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca02g02463 - - ccaj:109813387 423.32
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca02g02463 02 45765662 45766300 Cca02g02463 02 45765662 45766300 ECH