Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca02g02462 ATGGATATGCTTAACCAGAAGAAGAAGAAGATAAACACAGGCCGCAAGAAGATTGAGATCAAGAAGCTCGACAAGGCTAGCAACAAGCAAGTCACGTTCTCAAAAAGAAGAACGGGACTGTTCAAGAAAGCCAGCGAACTCTGCATTTTGTGCAATGTTTATGCAGCCATAATCGTCTTTTCTCCTGCTGACAAATTGTTCATCTTTTCTCACCCCGACATCGACACAATACTTACCCGCTATGTCAAAGGAACAGCAGAGTCTGAACCAACAAAGTCGAGAGGGAAAACGGTGTCGTATGAAGAGCATAACATGCAATATGAAGAGGCAAAGAAGAAGCTGGAGATGGAAAAGAAGATTCTGGAAGAAACTGAAATGTTGGCTAAGACTTGTAATGGAAATCTTTGGTGGAACCAGCCCGTTGATCAGATACTTGATGACCAGTTGGAACCGTTCATGGTGGCCGTTTATGAGTTGAGAAAAAAATTAGCAGAAAGGGCTACTCAATTGATGATGTTTGGGATGCAATAG 531 0.4237 MDMLNQKKKKINTGRKKIEIKKLDKASNKQVTFSKRRTGLFKKASELCILCNVYAAIIVFSPADKLFIFSHPDIDTILTRYVKGTAESEPTKSRGKTVSYEEHNMQYEEAKKKLEMEKKILEETEMLAKTCNGNLWWNQPVDQILDDQLEPFMVAVYELRKKLAERATQLMMFGMQ 176
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca02g02462 176 ProSiteProfiles MADS-box domain profile. 13 73 IPR002100 GO:0003677|GO:0046983
Cca02g02462 176 SUPERFAMILY SRF-like 14 87 IPR036879 GO:0003677|GO:0046983
Cca02g02462 176 SMART madsneu2 13 72 IPR002100 GO:0003677|GO:0046983
Cca02g02462 176 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 24 69 IPR002100 GO:0003677|GO:0046983
Cca02g02462 176 CDD MADS_MEF2_like 14 89 IPR033896 GO:0000977|GO:0045944
Cca02g02462 176 PANTHER AGAMOUS-LIKE MADS-BOX PROTEIN AGL62 10 173 - -
Cca02g02462 176 PRINTS MADS domain signature 15 35 IPR002100 GO:0003677|GO:0046983
Cca02g02462 176 PRINTS MADS domain signature 35 50 IPR002100 GO:0003677|GO:0046983
Cca02g02462 176 PRINTS MADS domain signature 50 71 IPR002100 GO:0003677|GO:0046983
Cca02g02462 176 Coils Coil 97 127 - -
Cca02g02462 176 PANTHER MADS BOX PROTEIN 10 173 - -
Cca02g02462 176 Gene3D - 25 126 IPR036879 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca02g02462 Cca-Chr2 45761044 45761574 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca02g02462 14 171 Type I MADS-box Gene Family AT5G60440 38.012 5.66e-32 114
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Cca02g02462 SRF-TF 3.6e-21 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca02g02462 - - gmx:100814979 224.942
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca02g02462 02 45761044 45761574 Cca02g02462 02 45761044 45761574 ECH