Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca02g02458 ATGGTTGTGTTTTCATCAAGGCTACTTTTTTCCTTTCTTTGTAATATTCTTCTCATAACAATTTCTATATCTCAAGTTAGCGCCGCTAACACTACACAAGACTACCAATACTTCTGTGATTTTACCAACAGAGGAAACTACACAGCCAACAGCACATACCACACGAACCTCAACACCCTTTTGTCCACTCTCATTTCCAATACAGAAATCGACTATGGTTTCTACAATTTCACAAACGGCGAAAACACTGACAAAGTGTACGCCATTGGGCTGTGCAGAGGAGATGTTAAGCCAGAAGAATGCCGCAGTTGTCTCAACGGTTCCAGGGCCAATCTCACACAGCTTTGTCCAAACAGAAAGGAAGCAATTGGGTGGTACGAGAATGAGAAATGCATGTTGCGCTACTCAGATCGCTCAATATTTTCCCTCATGGAAACTGGACCTGCGTATTATGCTCACAACACGATAAATGCAACGGACTTGGATCAGTTCAATCGAAGTCTCAGCTCGTTGCTGCGTGACTTGAAAAGCCAAGCTGCATCAGGTGACTCTCGTCTTAAGTATGGCGTAGGAAATATATCTATTCCTGATGACAAGGTCATATATGGTCTTGTTCAGTGCACACCGGACTTGTCAGGCTCAGATTGCGATGATTGCTTGGCTCAGTCCATTGAACGTATCCCAATAGATTGTTGTAAAGATAGCAAAGGTGGTAGGGTTGTTAGACCCAGTTGTAGCATGAGGTTTGAAACCTCGTACCATTTTTATGGACCTACAGCATATACACCGCCACCCTCCACCAGCACCACCTCAGAAGGAAGCAACACAATTACCATTGCCATAGCAGTTGCAGTACCAGTTTTCGTAGTTGTTGCGGTGCTCATTTTTATCTGCATCTATTTTAGAGCAAGGAAGCCAGGGAAGAAGTATAAAACTCAACAACAAGAAGAACATGATGATGATGAAATTGACATTTCTGAGTCATTGCAATTCAGCTTTAACACCATACGAGAAGCTACTGATAACTTTTCTGATTCTAATAAACTCGGACAAGGTGGATTTGGGGCTGTTTACAAGGGTAGGCTCTCCAACGGACAAGAGATTGCTGTCAAAAGGCTATCAGCGGATTCTAGACAAGGAGATACAGAATTCAAGAATGAAGTGCTTTTAGTGGCCAAGCTTCAGCACCGGAATTTAGTTAGGCTACTTGGTTTCTGTTTGGAAGGAAGGGAAAAACTACTTGTCTATGAATTTGTTCCAAATAAAAGCCTTGATTACTTCGTATTCAATCAGACTAATAGAGCACAATTAAATTGGGAAACACGCTACAAGATTATTGGAGGTACTGCTCGAGGCATTCTCTACCTCCATCAGGATTCTCGATTGCGCATTATTCATCGTGATCTCAAAGCAAGTAACATTCTTTTAGACGAAGAAATGAATCCTAAAATATCAGATTTTGGTTTAGCAAAATTATTTGTTGTGGATCAAACTCATGGAGATACAAATAGAATTGTTGGAACCTATGGATACATGGCACCTGAATATGCAATGCATGGACAGTTTTCAGAAAAGTCTGATGTTTTTAGTTTTGGTGTATTGGTTCTTGAGATTGTTAGTGGCCAGAGAAATAGTGGCATTAGTCATGGAGAGAATATAGAGGATCTACTAAGTTTTGCATGGCGAAACTGGAGGGAAGGCACTCCTAGAAATATTGTAGATCCCACATTAAACAACAGTTTTCAAAATGAAATAATGAGATGCATTCACATTGGACTACTCTGCGTTCAAGAAAATGTGTCTGCCAGACCCACTATGGCTTCCGTTGTACTCGTGCTTAATAGTCATTCTCTCACTCTCCCAGTACCATTAGCACCTGCATTTTATGTGGATAGTAGAACTGGAAACCTTCCAGACATGCACTTATGGGAGTTTAATTCGAGAACCACAGGATCAAGCGAATACACATCGATTAACGAGGCTTCAATTACTGAGCCATATCCTCGTTAG 2010 0.4119 MVVFSSRLLFSFLCNILLITISISQVSAANTTQDYQYFCDFTNRGNYTANSTYHTNLNTLLSTLISNTEIDYGFYNFTNGENTDKVYAIGLCRGDVKPEECRSCLNGSRANLTQLCPNRKEAIGWYENEKCMLRYSDRSIFSLMETGPAYYAHNTINATDLDQFNRSLSSLLRDLKSQAASGDSRLKYGVGNISIPDDKVIYGLVQCTPDLSGSDCDDCLAQSIERIPIDCCKDSKGGRVVRPSCSMRFETSYHFYGPTAYTPPPSTSTTSEGSNTITIAIAVAVPVFVVVAVLIFICIYFRARKPGKKYKTQQQEEHDDDEIDISESLQFSFNTIREATDNFSDSNKLGQGGFGAVYKGRLSNGQEIAVKRLSADSRQGDTEFKNEVLLVAKLQHRNLVRLLGFCLEGREKLLVYEFVPNKSLDYFVFNQTNRAQLNWETRYKIIGGTARGILYLHQDSRLRIIHRDLKASNILLDEEMNPKISDFGLAKLFVVDQTHGDTNRIVGTYGYMAPEYAMHGQFSEKSDVFSFGVLVLEIVSGQRNSGISHGENIEDLLSFAWRNWREGTPRNIVDPTLNNSFQNEIMRCIHIGLLCVQENVSARPTMASVVLVLNSHSLTLPVPLAPAFYVDSRTGNLPDMHLWEFNSRTTGSSEYTSINEASITEPYPR 669
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca02g02458 669 PANTHER CYSTEINE-RICH RECEPTOR-KINASE-LIKE PROTEIN 13 656 - -
Cca02g02458 669 Gene3D Transferase(Phosphotransferase) domain 1 419 619 - -
Cca02g02458 669 Gene3D Phosphorylase Kinase; domain 1 304 418 - -
Cca02g02458 669 ProSiteProfiles Protein kinase domain profile. 343 619 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca02g02458 669 ProSitePatterns Serine/Threonine protein kinases active-site signature. 464 476 IPR008271 GO:0004672|GO:0006468
Cca02g02458 669 ProSitePatterns Protein kinases ATP-binding region signature. 349 371 IPR017441 GO:0005524
Cca02g02458 669 SMART serkin_6 343 619 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca02g02458 669 ProSiteProfiles Gnk2-homologous domain profile. 35 140 IPR002902 -
Cca02g02458 669 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 13 656 - -
Cca02g02458 669 SUPERFAMILY Protein kinase-like (PK-like) 331 649 IPR011009 -
Cca02g02458 669 Pfam Salt stress response/antifungal 157 251 IPR002902 -
Cca02g02458 669 Pfam Salt stress response/antifungal 39 137 IPR002902 -
Cca02g02458 669 ProSiteProfiles Gnk2-homologous domain profile. 146 254 IPR002902 -
Cca02g02458 669 Pfam Protein tyrosine and serine/threonine kinase 346 610 IPR001245 GO:0004672|GO:0006468
Cca02g02458 669 CDD STKc_IRAK 349 614 - -
Cca02g02458 669 Gene3D - 34 139 IPR038408 -
Cca02g02458 669 Gene3D - 147 254 IPR038408 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca02g02458 Cca-Chr2 45742083 45746015 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca02g02458 7 669 Receptor kinase-like Gene Family AT4G21410 49.928 0.0 625
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Cca02g02458 PK_Tyr_Ser-Thr 3.3e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca02g02458 - - var:108324787 923.694