Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca02g02457 ATGGATGCTATTTGTTTGAAGTTCCTTTCCTTTGTTTGGTGTCTCTTTGTCGTAGTGGTATCGCATGTGAGTGCCCAGGCATCATGTGATAACAGCAAAGGCAACTACACAAGCAATAGCACCTATCACAACAACCTCAACACCCTCTTGTCCAGTTTCTATTCCCGCACAGAAATCAACTACGGTTTCTACAATTTCTCATATGGCCAAGGCACGGACAAAGTATACGCCATTTGGCTCTGCAGAGGAGATATTACTCAGGATAAATGCCTCGGATTCCTCAATCAATCCAGAGTCACTCTCGCACAGCAATGTCCAAACCAGAAAGAGGCTATTTTTTGGACTGGAGAGTGCATGTTGCGCTACTCTAACCGCTCAATATTTGGCCTCATGGAAAATCAACCTACGGTCGAACTCTTGTACACGTTGAACGTAACTGGTTCGGTGGATCAATTCAATGAAGCGCTCCAGAACTTGATGAGGAATCTAACGGCCATAGCTGCATCAGGTGACTCTCGTCGTAAGTATGCTACAGGTTCTGCACCTGCTCCGAATTTTAAAACCATATACGGTCTAACACAGTGCACGCCCGATTTGTCATCCGAAGATTGCACCAAGTGCTTGGACGAAGCTATCTCAAAAATCCCAGATTGTTGTAGTGGCAAGGCTGGAGGCAATGTTTTAAAACCCAGTTGTAGAATTAGATTTGACCCTTACAGCTACTACGGACCTACGATCAAATTAGACACAGATGCACCACCCCCATCACCCTCCACCAACGTCACTTCTTCACAAGGAAAGAGCAACACAGTCACCCGAACTGTCATCGCCATAGCAGTGCCCGTTGCTGGTGTTGTTTTAGCACTCGCTCTTTTCTGCATCTTTCAAAGAGTTAGGAAGCCAAGAAAAAAGATCCAAATTAAAAGAGAAGAAGATGGTCATGAAGATGAAATTACATTTGCTGAGTCATTGCAATTCAACTTTGACACCATACGAGTCGCTACAAATGAATTTGCTGATTCTAATAAACTTGGAGAAGGCGGGTTTGGAGCTGTATACATAGGTCAGCTTTCCAATGGACAAGAGATTGCTGTAAAAAGGTTGTCAAGGGATTCTGGGCAAGGAGATATAGAATTTAAGAATGAAGTGCTTTTAGTGGCCAAGCTTCAGCACCGAAATTTAGTTAGGCTACTTGGTTTCTGCCTCGAAGGAAGAGAAAGGCTACTTGTGTATGAATTTGTTCCTAATAAAAGCCTTGATTACTTCATATTTGATCCAATAAAGAAAATGCTATTGAATTGGCAAAATCGCTACAAAATTATTGGAGGTATTGCTCGAGGCATTCTTTATCTCCACGAAGATTCTAGATTGCGAATTATACATCGTGACCTCAAAGCAAGCAACATTCTCTTAGATGAAGACATGCTTCCTAAGATATCAGATTTTGGATTAGCAAGATTAGTTCACATTGATCAAACTCAAGAAAACACAAGTAGAGTTGTTGGAACATATGGATACATGGCACCTGAATATGCAATATATGGTCAATTTTCTGCAAAATCAGATGTTTTTAGTTTTGGTGTATTGCTTCTTGAGATTGTAAGTGGTAAAAAAAATAGTGGTATTCATCGTGGAGAGAACATGGAGGATTTATTGACCTTTACATGGCGAAACTGGAGGGATGGAACAGCTACAAATATTGTAGATCCGACATTAGATAACGGCTCGAGAGATGAAAAAATGAGATGCATCCACATTGGATTATTATGTGTTCAAGAAAATGTGGCTGCTAGACCAACCATGGCCTCTGTTGTGCTCATGCTCAATAGTTATTCTCTCACTCTTCCGGTACCTTCAGAACCTGCATTCGTTGTGGATAGTAGAACTAGAAGCCTTCCGAACATGCTATCATCATCAACGCATAATTCAGGGGAAACACGATCAAGTGAATCAACTCACAATTCAGTTAATAAGGCTTCAATTACTGAGCCGTATCCTCGCTAG 2004 0.4152 MDAICLKFLSFVWCLFVVVVSHVSAQASCDNSKGNYTSNSTYHNNLNTLLSSFYSRTEINYGFYNFSYGQGTDKVYAIWLCRGDITQDKCLGFLNQSRVTLAQQCPNQKEAIFWTGECMLRYSNRSIFGLMENQPTVELLYTLNVTGSVDQFNEALQNLMRNLTAIAASGDSRRKYATGSAPAPNFKTIYGLTQCTPDLSSEDCTKCLDEAISKIPDCCSGKAGGNVLKPSCRIRFDPYSYYGPTIKLDTDAPPPSPSTNVTSSQGKSNTVTRTVIAIAVPVAGVVLALALFCIFQRVRKPRKKIQIKREEDGHEDEITFAESLQFNFDTIRVATNEFADSNKLGEGGFGAVYIGQLSNGQEIAVKRLSRDSGQGDIEFKNEVLLVAKLQHRNLVRLLGFCLEGRERLLVYEFVPNKSLDYFIFDPIKKMLLNWQNRYKIIGGIARGILYLHEDSRLRIIHRDLKASNILLDEDMLPKISDFGLARLVHIDQTQENTSRVVGTYGYMAPEYAIYGQFSAKSDVFSFGVLLLEIVSGKKNSGIHRGENMEDLLTFTWRNWRDGTATNIVDPTLDNGSRDEKMRCIHIGLLCVQENVAARPTMASVVLMLNSYSLTLPVPSEPAFVVDSRTRSLPNMLSSSTHNSGETRSSESTHNSVNKASITEPYPR 667
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca02g02457 667 ProSitePatterns Serine/Threonine protein kinases active-site signature. 459 471 IPR008271 GO:0004672|GO:0006468
Cca02g02457 667 CDD STKc_IRAK 344 609 - -
Cca02g02457 667 ProSiteProfiles Gnk2-homologous domain profile. 24 127 IPR002902 -
Cca02g02457 667 MobiDBLite consensus disorder prediction 247 266 - -
Cca02g02457 667 MobiDBLite consensus disorder prediction 634 661 - -
Cca02g02457 667 Pfam Protein tyrosine and serine/threonine kinase 342 605 IPR001245 GO:0004672|GO:0006468
Cca02g02457 667 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 5 653 - -
Cca02g02457 667 Gene3D Phosphorylase Kinase; domain 1 300 413 - -
Cca02g02457 667 ProSiteProfiles Protein kinase domain profile. 338 612 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca02g02457 667 Pfam Salt stress response/antifungal 149 237 IPR002902 -
Cca02g02457 667 Pfam Salt stress response/antifungal 29 124 IPR002902 -
Cca02g02457 667 SUPERFAMILY Protein kinase-like (PK-like) 326 638 IPR011009 -
Cca02g02457 667 Gene3D - 136 241 IPR038408 -
Cca02g02457 667 Gene3D - 23 126 IPR038408 -
Cca02g02457 667 ProSiteProfiles Gnk2-homologous domain profile. 133 241 IPR002902 -
Cca02g02457 667 PANTHER CYSTEINE-RICH RECEPTOR-KINASE-LIKE PROTEIN 5 653 - -
Cca02g02457 667 SMART serkin_6 338 612 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca02g02457 667 ProSitePatterns Protein kinases ATP-binding region signature. 344 366 IPR017441 GO:0005524
Cca02g02457 667 Gene3D Transferase(Phosphotransferase) domain 1 414 615 - -
Cca02g02457 667 MobiDBLite consensus disorder prediction 252 266 - -
Cca02g02457 667 MobiDBLite consensus disorder prediction 634 667 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca02g02457 Cca-Chr2 45731681 45734778 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca02g02457 6 667 Receptor kinase-like Gene Family AT4G21410 47.889 0.0 624
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Cca02g02457 PK_Tyr_Ser-Thr 2.4e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca02g02457 - - gmx:113000777 1028.85