Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca02g02455 ATGGGTGCAGTAACAGTTGGTTCGGTGGTTGTTTCCGTTCTTTGTTGTGTGTTTGTAAATTTGATATCTGAAAGCAGTGGGCAGCCAGACGGTGTATTCTGTTATGATGAGAGAGGAAACTACACAGCCAACAGCATCTATAAAGCCAACCTCAACACCCTTTTATCCACTCTCTCTTCCCACACACAAATCAACTATGGTTTCTACAACTTCTCTTATGGTCAAAATTCAGACATAGTCAACGCCGTTGGATTGTGCAGGGGAGATGTTGAGCCAGATGAGTGTCGCGCTTGCCTCAACCATTCCACAGGCAATCTCACACGGACATGTCCAAACCAGAAAGAGGCTGTTCTGTGGTTTGACAAATGCATGCTGCGATACTCGAACCGTACAATATTCGGCATCATGGAAACTGATCCTCCTCTTTACTCGTGGTACGGAAACAATGCAACCCAAGTGAATGAGTTCAATCAAGTGCTCTGGAACTTGATGGCAAACCTCAAAGCCAAAGCTGCATCAGGTGACTCTCGTCGTAAGTACGCCACCGGTAACGCAACTGCTTCAAATTTTCAAAACATATACGGTTTTGTGCAGTGCACCCCTGATTTGTCTCAGCAAGAATGCAATGATTGCTTGGATCTCGCTTTCTCAGAAGTCCAAACTTGCTGTAGTGGCAGGAGAGGAGCTAGAATCATGGCACCCAGTTGCAATATTAAATATGATTACTACCGCTTCTACCAACAAACCACGGAGTTAGACCCACAACTACCACCACTTCCTTCAAAAGAAACCGGCATCACAATAGGAATTGTCGTTGCCATAGTTGTGTCTACTGTTGTTGTTGTTTTGCTCCTTTGTCTCTGCGGATATTTGAGGTGGCGGAAGGCAAGGAAAAATCTTTCAGTTAaaggagaagaagaagatgatgaggatgaaATCAAAATTGCGGAATCATTACAATTCAACTTGGACACAATAAGAGAAGCGACAGGAGATTTCTCTGATTTTAATAAAGTTGGAGAAGGTGGTTTTGGAGCTGTTTACAGGGGTAGGCTCTCCGATGGGCTGATGATTGCAGTCAAAAGGTTGTCGAGAGAATCCAGCCAAGGAGATACGGAATTTAAGAATGAAGTGCTTTTAGTGGCGAAGCTGCAGCACCGAAATTTAGTAAGGCTACTTGGTTTCTGCTTGGAAGGAAGAGAAAGACTACTTGTCTATGAATTTGTTCATAATAAAAGTCTTGATTATTTCATATTTGATCAAACCATGAAAGCCCAACTGGATTGGAAAATGCGTTACAAAATCATTGGAGGTATTGCCCGAGGTCTTCTCTACCTTCACGAAGATTCTCGACTACGTATTATACACCGTGATCTCAAAGCAAGTAACATTCTCTTAGATGAAGAAATGAATCCTAAGATAGCTGATTTTGGCTTGGCAAGACTAGTTTTAATGGATCAAACTCAAGCAAATACAAGTAGAATTGTCGGAACCTAA 1497 0.4175 MGAVTVGSVVVSVLCCVFVNLISESSGQPDGVFCYDERGNYTANSIYKANLNTLLSTLSSHTQINYGFYNFSYGQNSDIVNAVGLCRGDVEPDECRACLNHSTGNLTRTCPNQKEAVLWFDKCMLRYSNRTIFGIMETDPPLYSWYGNNATQVNEFNQVLWNLMANLKAKAASGDSRRKYATGNATASNFQNIYGFVQCTPDLSQQECNDCLDLAFSEVQTCCSGRRGARIMAPSCNIKYDYYRFYQQTTELDPQLPPLPSKETGITIGIVVAIVVSTVVVVLLLCLCGYLRWRKARKNLSVKGEEEDDEDEIKIAESLQFNLDTIREATGDFSDFNKVGEGGFGAVYRGRLSDGLMIAVKRLSRESSQGDTEFKNEVLLVAKLQHRNLVRLLGFCLEGRERLLVYEFVHNKSLDYFIFDQTMKAQLDWKMRYKIIGGIARGLLYLHEDSRLRIIHRDLKASNILLDEEMNPKIADFGLARLVLMDQTQANTSRIVGT 498
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca02g02455 498 Pfam Salt stress response/antifungal 34 129 IPR002902 -
Cca02g02455 498 Pfam Salt stress response/antifungal 149 241 IPR002902 -
Cca02g02455 498 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 8 498 - -
Cca02g02455 498 SMART serkin_6 333 496 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca02g02455 498 Gene3D Phosphorylase Kinase; domain 1 295 408 - -
Cca02g02455 498 Gene3D Transferase(Phosphotransferase) domain 1 409 498 - -
Cca02g02455 498 ProSitePatterns Protein kinases ATP-binding region signature. 339 361 IPR017441 GO:0005524
Cca02g02455 498 SUPERFAMILY Protein kinase-like (PK-like) 317 498 IPR011009 -
Cca02g02455 498 Pfam Protein kinase domain 334 492 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca02g02455 498 Gene3D - 32 131 IPR038408 -
Cca02g02455 498 Gene3D - 142 245 IPR038408 -
Cca02g02455 498 ProSitePatterns Serine/Threonine protein kinases active-site signature. 454 466 IPR008271 GO:0004672|GO:0006468
Cca02g02455 498 ProSiteProfiles Gnk2-homologous domain profile. 29 132 IPR002902 -
Cca02g02455 498 PANTHER CYSTEINE-RICH RECEPTOR-KINASE-LIKE PROTEIN 8 498 - -
Cca02g02455 498 ProSiteProfiles Protein kinase domain profile. 333 498 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca02g02455 498 ProSiteProfiles Gnk2-homologous domain profile. 138 245 IPR002902 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca02g02455 Cca-Chr2 45690838 45694325 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca02g02455 34 498 Receptor kinase-like Gene Family AT4G21410 50.612 3.23e-157 461
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Cca02g02455 Pkinase 1.3e-32 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca02g02455 - - gmx:100782800 665.996