Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca02g02454 ATGGCCATGATTCCTTGGCTGCTTCTGTTTTCATTATTTCCTTCTGTCTTTTCCGCATACAGATCCGACGACCAACTAAACTTCATTTACCATACCTGTAACATGGAGCTCGGAAACATTACTACTGATACCTACTCCAAAAACCTGAATAACCTTTTGGAGAAAATATATTCCGACAAAGAAATTGACGACGGGTTCTACAATTTCTCTGATGGCGAAGAGCCTGACAAAGTTTACGCTATCGGTCTCTGCAGAGGCGATGTTAAGGCAGAGGCATGCCGTAGTTGCCTCTCACGCGCCTCAAGCCTTCTCACAGATAGGTGCCGACAACAGAAAGAGGCGATTGGATGGTATGAGGTGTGCATGTTACGCTACTCCAACAGCTCAATAGTTGAACAAACTGTAACTGATAGCAGCGACATAGTAAAATGCAGCCCAGATAATACGACAAAGAAAGATGCGTTTGATGAAGCGTTGGAGGGGTTGGTGGATAGACTGAGAACCACGGCCGCAGGTGGTGACTCCCGTCGCAAGATTGGTGAAGGAGAGGCTCCGGTTCGATCAAGCGATGAAACCATATACGGTCTTCTTCAGTGCGCGCCTTATTTGTCTTACTCAAACTGCTCTAAGTGCTTGCAGTATGCTATGTCGAGAACTATTTCACTTTCATCACCTAATTGTGAAGGAAGGAGTGGGGGAAGATATCTAGGGCGAAGCTGTTCCTTAAGATACGATATTTACTCCTTTTTCGATTTCACTGTGGATGCACCTGCTCCACAGCCTACCCAACCACTTCCCCTTGAAAAAGgaaagagcaaacaatcacgaactatcattgctgtagtcgtgccagtcgttgcggttgccgttgccgCACTCCTGCTTCTCATGTTCAATTATGCAAGACCCAGAAGACCAAGACCCAAGCGTCTCCCAAGGGACGGTGAAGCTGATGAATCTGAAGGTGATGATGAATCAGAACTTGGTAATAACATTAAAACAGATGAGTTGCTGCAATATGACTTTGCAACCATCAAATTTGCTACAAATAACTTTTCTGACGCAAATAAGCTTGGTCAAGGTGGATTTGGAATTGTTTATAAGGGTACGCTCTCCGATGGACAAGAAATTGCTATTAAAAGATTGTCTATCAATTCTAAccaaggagaaacagaatttaagaatgaaatcatgctaacgggaaagcttcagcaccgaaacttagttagactactcggcttttgttttgctagaagagaaaggttattgatatatgagtTTGTTCCCAATAAAAGCCTTGATTATCTCATATTTGATCCAAACAAACGGGCAAGCTTAAATTGGGAAAGACGTTATTCAATTATAAGAGGTATTGCTAGAGGTCTTCTTTATCTTCATGAAGATTCTCGATTACCAGTTGTTCATCGTGATCTCAAAACAAGTAACATTTTGTTAGATAAAGAGTTAAATCCCAAAATATCAGATTTTGGTATGGCAAGATTATTTGAGATCAATCAAACTCAAGCCAATACGAGCACAATTGTTGGTACCTTGTACGTATATAAAAATGCTTGA 1575 0.3689 MAMIPWLLLFSLFPSVFSAYRSDDQLNFIYHTCNMELGNITTDTYSKNLNNLLEKIYSDKEIDDGFYNFSDGEEPDKVYAIGLCRGDVKAEACRSCLSRASSLLTDRCRQQKEAIGWYEVCMLRYSNSSIVEQTVTDSSDIVKCSPDNTTKKDAFDEALEGLVDRLRTTAAGGDSRRKIGEGEAPVRSSDETIYGLLQCAPYLSYSNCSKCLQYAMSRTISLSSPNCEGRSGGRYLGRSCSLRYDIYSFFDFTVDAPAPQPTQPLPLEKGKSKQSRTIIAVVVPVVAVAVAALLLLMFNYARPRRPRPKRLPRDGEADESEGDDESELGNNIKTDELLQYDFATIKFATNNFSDANKLGQGGFGIVYKGTLSDGQEIAIKRLSINSNQGETEFKNEIMLTGKLQHRNLVRLLGFCFARRERLLIYEFVPNKSLDYLIFDPNKRASLNWERRYSIIRGIARGLLYLHEDSRLPVVHRDLKTSNILLDKELNPKISDFGMARLFEINQTQANTSTIVGTLYVYKNA 524
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca02g02454 524 ProSitePatterns Serine/Threonine protein kinases active-site signature. 473 485 IPR008271 GO:0004672|GO:0006468
Cca02g02454 524 ProSiteProfiles Protein kinase domain profile. 352 524 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca02g02454 524 Pfam Salt stress response/antifungal 144 245 IPR002902 -
Cca02g02454 524 Pfam Salt stress response/antifungal 33 127 IPR002902 -
Cca02g02454 524 ProSiteProfiles Gnk2-homologous domain profile. 26 130 IPR002902 -
Cca02g02454 524 Pfam Protein kinase domain 353 518 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca02g02454 524 Gene3D - 25 129 IPR038408 -
Cca02g02454 524 Gene3D - 139 249 IPR038408 -
Cca02g02454 524 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 21 518 - -
Cca02g02454 524 MobiDBLite consensus disorder prediction 306 329 - -
Cca02g02454 524 Gene3D Transferase(Phosphotransferase) domain 1 428 521 - -
Cca02g02454 524 ProSiteProfiles Gnk2-homologous domain profile. 137 249 IPR002902 -
Cca02g02454 524 SUPERFAMILY Protein kinase-like (PK-like) 335 519 IPR011009 -
Cca02g02454 524 PANTHER CYSTEINE-RICH RECEPTOR-KINASE-LIKE PROTEIN 21 518 - -
Cca02g02454 524 SMART serkin_6 352 524 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca02g02454 524 ProSitePatterns Protein kinases ATP-binding region signature. 358 380 IPR017441 GO:0005524
Cca02g02454 524 Gene3D Phosphorylase Kinase; domain 1 316 427 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca02g02454 Cca-Chr2 45656081 45661969 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca02g02454 1 517 Receptor kinase-like Gene Family AT4G21410 41.948 1.56e-128 388
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Cca02g02454 Pkinase 1.3e-33 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca02g02454 - - gmx:100789471 672.93