Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca02g02452 ATGGCTGCTATGCCCACAGTTTCCAAAAGCTTTCTCTTATTTGTTATTCTCATTCTCATGATCATGTCTCTAGCCACAGCCCAGCCAAGCTTTGTGAAATATTATTGTGATGACAACAATGGCAACTACACTGCTAATAGCACCTTCCAGGCGAATCTCAACACCCTTCTCTCCAAACTCACTTCCAACACCGAAACCAACACCAACTACGGCTTCTACAATTTCTCCAAAGGCCAAAACCAAAACTCTGACAAAGTCAACGTCATTGGGATGTGTAGAGGAGATGTCAATACAGAAGCTTGCACTAGTTGCCTCAATGATTCAGTAGTCCTTCTCACACGCCTTTGTCCAAACCAGAAGGAGGCAATTGCGTGGTATGATTCGTGCATGCTGCGATACTCTAACCGCTCAATATTTGGAATCATGGAATTTGAACCTTCATATTTAATATCCAACAACAAATATGCAACAAGCGTGGATCGGTATAATGAAGTTGTTGAGGACCTGCTGAGAAGTCTAGCGAGCAAAGCTGCTTCCGGTGATTCCCACCTTAAGTTTGCTGAAGCAAGTCAGAAAGGTCCAAGCTTTCAAACTGTATTTGCTCATGTTCAATGCACACCTGATTTATCAAACTTACAATGCAACCAGTGCTTGTTTAGAGCAATGTCATATATCCCAAAATGCTGCTCTGGCAAGGTACGTGGCAGAATTTTTAAACCCAGTTGTAATCTTAGATTTGACACCACCCCATACTTGGATCCTACTTATGTGCCACCTTCACTCACACCGCAATCACTTCCTTCTCCTTCTCCATCCATCCATGCCACTTTCAGAAAAGGTAAGAGCAACTCGTGGCGAACTGTCATAGCCATAATTGCGGCAATTGTCTCCGTTATGATACTAGTCACCTTTACGTGCATCTATTTAAGACGAAGGAAGCCAAGGATGTATTTTGAAAGTGAATCTGAAGCTGACTATGACATTGAACCTACTCAGACATTACAATTTGACTTCCAAGCCATCATAGATGCAACAAATAACTTTGCAGATGCAAATAAGCTTGGACAAGGTGGATTTGGACCAGTCTACAAGGGTACGCTTCCCAGTGGCAAAGAAGTTGCTATCAAACGGTTGTCCAGGGGTTCTGGCCAAGGAGATATAGAATTTAAAAATGAACTGCTATTATTAGCAAAGCTTCAACACCGAAATTTAGTAAGGCTACTGGGGTTTTGTTTGGAAACAGGAGAAAGGATACTGGTGTACGAGTTTCTTCCCAATAAAAGCCTTGATTACTTCATATTTGGTAACACATTTTCTGTTTGA 1323 0.4187 MAAMPTVSKSFLLFVILILMIMSLATAQPSFVKYYCDDNNGNYTANSTFQANLNTLLSKLTSNTETNTNYGFYNFSKGQNQNSDKVNVIGMCRGDVNTEACTSCLNDSVVLLTRLCPNQKEAIAWYDSCMLRYSNRSIFGIMEFEPSYLISNNKYATSVDRYNEVVEDLLRSLASKAASGDSHLKFAEASQKGPSFQTVFAHVQCTPDLSNLQCNQCLFRAMSYIPKCCSGKVRGRIFKPSCNLRFDTTPYLDPTYVPPSLTPQSLPSPSPSIHATFRKGKSNSWRTVIAIIAAIVSVMILVTFTCIYLRRRKPRMYFESESEADYDIEPTQTLQFDFQAIIDATNNFADANKLGQGGFGPVYKGTLPSGKEVAIKRLSRGSGQGDIEFKNELLLLAKLQHRNLVRLLGFCLETGERILVYEFLPNKSLDYFIFGNTFSV 440
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca02g02452 440 ProSiteProfiles Protein kinase domain profile. 348 440 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca02g02452 440 ProSiteProfiles Gnk2-homologous domain profile. 144 251 IPR002902 -
Cca02g02452 440 Gene3D - 28 137 IPR038408 -
Cca02g02452 440 Gene3D - 146 251 IPR038408 -
Cca02g02452 440 Pfam Salt stress response/antifungal 153 248 IPR002902 -
Cca02g02452 440 Pfam Salt stress response/antifungal 36 135 IPR002902 -
Cca02g02452 440 Gene3D Phosphorylase Kinase; domain 1 312 423 - -
Cca02g02452 440 SUPERFAMILY Protein kinase-like (PK-like) 324 437 IPR011009 -
Cca02g02452 440 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 9 435 - -
Cca02g02452 440 ProSiteProfiles Gnk2-homologous domain profile. 31 138 IPR002902 -
Cca02g02452 440 Pfam Protein tyrosine and serine/threonine kinase 352 433 IPR001245 GO:0004672|GO:0006468
Cca02g02452 440 PANTHER CYSTEINE-RICH RECEPTOR-KINASE-LIKE PROTEIN 9 435 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca02g02452 Cca-Chr2 45637884 45641269 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca02g02452 10 436 Receptor kinase-like Gene Family AT4G05200 42.857 1.69e-111 342
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Cca02g02452 Stress-antifung 2.8e-22 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca02g02452 - - ccaj:109806125 839.721