Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca02g02450 ATGCTTCTCTTCAACATCAATTGTGTAACTGTAACCTCGTTTCTGCTCCTCTCTCTATTGGGATCACTCCCATCCCCAACCTTAGGGTCTCCGAATTACAACGACATTTACTGTCCAAACAACGCAACCTACGAATCCAACACCACATTCCAAACCAATCTCAATGTCCTCCTCGCTTCTCTCACCTCCAACGCCACCCAAGGCGTTGACTCCTACGCCACCATCATGGGCTTCGGAACCACCAACGCCGTCAACGGCCTCTTCATCTGCCGCGCCGACCTCTCCTCCGCCACCTGCCGCGACTGCGTCGCCACCGCCGCCGCAGACTTCACGCGGCGCTGCCCCAACCAGACGGAGTCCGTAATCTGGTACGACGAGTGCACGGTACGTTACACGAACCGCTACTTCAACCCTACCGGCATCGTTCCAAGGGCGAACCTGTGGGACGACAAGAACATCTCGGCCTCGGATTGGCGAAGCTTCAACCAAACGTTGTTTGGCTTGTTGAACAGCTTGGCTACCGAAGCTGCCGGTTCCCAGTCAGAGACGAAATTCGCGAGCGGGGAGGTTAACTTCACGGCCTCTTCGCGCGTGTATGGGTTGGCGCAGTGCGGGGTTGGCATGACGAATTCTCAGTGTGAAGCGTGTTTGGTGAATGCCTCGAAAACTCTTGCCACATACGAATTGTATCAGTTTTACAACACTAGTGCTGCGTCCCCTCCGGTTTCTCCTGCTCCGCAAGGAAAGAAGAAATCAGGGTCTCCAAGTGCTGTCGTAATTGTTGTTCCTGTCGTGGTGGTTTCGATAATTCTCTTTTGTTCGGTCTGCTATTTTCTCGTGAGAAGATCAAGGAAGAATTATAACACTCTTTTAAAAGAAAATTTTGGGGATGAAAGTGCCACTTTAGAGTCATTACAATTTAATTTGGCAACAATTGAAGTCGCTACAAAGAAATTTTCATATGAGAACAAAATAGGCAGGGGAGGATTTGGAGAGGTTTATAAGGGTATTCTTATTGATGGAAGACAAATAGCTGTGAAAAAACTTTCTCGTAGCTCAGGACAAGGTGCCGTAGAGTTTAAGAATGAGATTTTACTGATAGCTAAGCTTCAACATAGAAATTTGGTGGCATTGATAGGATTTTGCTTGGAAGATCAAGAAAAAATGCTCATTTATGAATATGTACCCAATAAAAGTCTTGATTACTTTTTATTTGATCGTCACAAGACTAGATTGTTAAATTGGGATGAACGTTACAAAATTATTGAAGGAATTGCACAAGGAATACTTTACCTACATGACCATTCAAGGTTGAAAGTTATACATCGTGATCTTAAACCTAGTAATGTATTGTTAGATAACAATATGAATCCAAAAATATCGGATTTTGGCATCGCAAGAATGATCGCTTTAGAACAAGATCGAGGAAGTACAAATAGAATTGTGGGAACCTACGGTTACATGTCTCCAGAATATGCAATGCACGGACAATTTTCTGAAAAATCAGATGTTTTTAGTTTTGGAGTCATAGTTTTGGAGACAATAAGTTCAAAAAGGAATGCTCGTTCTCTATTATCAGATAATGTTGACGATCTATTAAGTGATGCGTGGAGACAATGGAGAGATGAAACACCATTAAAAATATTGGATCAAGATATAGAAGAATCTAGCAATCATAATGAAGTTGTCAAGTGCATTCAGATTGGTCTATTATGTAACAACCTCAACACCCTTTTGTCTAACCTCTCTTCCAACACAAACATTGACTATGGCTTCTACAATTTTTCTTATGGCCAAGATAGTGACAGAGTTAACGCAATTGGTCTGTGCAGAGGAGATGTTAAGCCAGATGCTTGCCGCAGATGCTTCAATGATTCCAGAGTCCTTCTCACACAAATATGTCCAAATCGGAAAGAGGCAATTGGGTGGTATGACAACTGCATGTTACGCTACTCCAACCGCTCAATATTCGACACCTTAGAAACTTCTCCTGGTTTCTACAAGAGTAATGGTAATAATGCAACAGATGTTGATCAATTCAATGAAGTATTGAGGAACTTGCTAGAAAGCCTCATAAGCAATGCTTCGCTAGGGGACTCCAAGCGTAAGTTTGCTGCAGCAAATGTATCAGGACCAGCCTTTCAAACTATATGGGGTCTTGTGCAGTGTACCCCTGACTTGTCAGAACAAGAATGCAGTAAATGCTTGGTCGGGGCAATCTCAGAAATTCCACAATATTTTGATGGCAAGATAGGTGGTAGAATTGGAAGACCCAGTTGTAACTTCAGATATGAGATATACCCCTTCTACGACTCTACCAACGTTGTAATACCACAAGCACCAGCACCGAAGGTGTCTGCTCTTCCTCCTTCGTCAAAAGATGTCTCTTCCACAGAAGGAAAAAGCAACACATCTCGAACTGTAATAGCTATAGTTGTGTCAATTATTGCCGTTGTCACACTAGTAGCCCTTATTTGCATCTATTTAAGAATAAGGAGGTCGCGGAAACAAATTCTAGAAAATGATGATGAAATTGGATCAGCAAAGACGTTACAATTGGACTTTGCCACAATTGTGGCTGCTACCAACAACTTTTCTGATGCAAATAAGCTGGGACAAGGAGGATTTGGACCTGTTTACAAGGGTATGCTCTCCAATGACCAGGAAGttgcagtgaaaaggttgtcaaggaattccctccaaggagacatagagttcaagaatgaagtgctcttagtggccaagcttcagcaccgaaatttagttaagctacttggattttgtttggaaagaagagaaaggctactagtgtatgaatTTGTTCCTAATAAAAGCCTCGATTTCTTCATATTTGATCAAATCAGACGTGGGCAAttggattgggaaaaacgatacaaaatcataggaggcattgctagaggccttctataccttcacgaggattcacgattgaggattattcaccgtgatctgaaagcaagtaatattttgttggatgcagaaatgcatcctaaaatatcagattttggtatggcaagattAGTTGAAGTGGATCAAACTCAGGAAAATACAAATAGAATTGTTGGAACCTATGGATATATGGCTCCAGAGTATGCCATGCATGGACAATTTTCAGTAAAATCTGATGTTTTTAGTTTTGGTGTATTGGTTCTAGAGATTGTAAGTGGCCAGAAAAATAGTTGGGCACGTAGAGGGGAGAATGTAGGGGATTTACTAACCTTTACTAGGCAAAACTGGAGGGAAGGAACAGCCTCAAACATTGTTGATCCGGCAATCACTGATGGTTCGAGAAATGAAATGATGAGATGTATCCACATTGCGTTGCTTTGTGTTCAGGAAAATGTGGCTGATAGACCAACCATGGCTTCTGTTGCACTTATGCTTAACAGCTACTCTGTTACTCTTCCATTGCCTTCACAACCTGCTTTCTCTATTGATAGTAGAAGTTTATCAGTGATTCAATCAGAAGAGAATGATTCAGAGGCAGGAACATCAGAAGAATCAAATATTCAATCTGTACAAGCATCTGTAAACGAGGCTTCCATTACTGAGCCATTTCCTCGCTAG 3588 0.3868 MLLFNINCVTVTSFLLLSLLGSLPSPTLGSPNYNDIYCPNNATYESNTTFQTNLNVLLASLTSNATQGVDSYATIMGFGTTNAVNGLFICRADLSSATCRDCVATAAADFTRRCPNQTESVIWYDECTVRYTNRYFNPTGIVPRANLWDDKNISASDWRSFNQTLFGLLNSLATEAAGSQSETKFASGEVNFTASSRVYGLAQCGVGMTNSQCEACLVNASKTLATYELYQFYNTSAASPPVSPAPQGKKKSGSPSAVVIVVPVVVVSIILFCSVCYFLVRRSRKNYNTLLKENFGDESATLESLQFNLATIEVATKKFSYENKIGRGGFGEVYKGILIDGRQIAVKKLSRSSGQGAVEFKNEILLIAKLQHRNLVALIGFCLEDQEKMLIYEYVPNKSLDYFLFDRHKTRLLNWDERYKIIEGIAQGILYLHDHSRLKVIHRDLKPSNVLLDNNMNPKISDFGIARMIALEQDRGSTNRIVGTYGYMSPEYAMHGQFSEKSDVFSFGVIVLETISSKRNARSLLSDNVDDLLSDAWRQWRDETPLKILDQDIEESSNHNEVVKCIQIGLLCNNLNTLLSNLSSNTNIDYGFYNFSYGQDSDRVNAIGLCRGDVKPDACRRCFNDSRVLLTQICPNRKEAIGWYDNCMLRYSNRSIFDTLETSPGFYKSNGNNATDVDQFNEVLRNLLESLISNASLGDSKRKFAAANVSGPAFQTIWGLVQCTPDLSEQECSKCLVGAISEIPQYFDGKIGGRIGRPSCNFRYEIYPFYDSTNVVIPQAPAPKVSALPPSSKDVSSTEGKSNTSRTVIAIVVSIIAVVTLVALICIYLRIRRSRKQILENDDEIGSAKTLQLDFATIVAATNNFSDANKLGQGGFGPVYKGMLSNDQEVAVKRLSRNSLQGDIEFKNEVLLVAKLQHRNLVKLLGFCLERRERLLVYEFVPNKSLDFFIFDQIRRGQLDWEKRYKIIGGIARGLLYLHEDSRLRIIHRDLKASNILLDAEMHPKISDFGMARLVEVDQTQENTNRIVGTYGYMAPEYAMHGQFSVKSDVFSFGVLVLEIVSGQKNSWARRGENVGDLLTFTRQNWREGTASNIVDPAITDGSRNEMMRCIHIALLCVQENVADRPTMASVALMLNSYSVTLPLPSQPAFSIDSRSLSVIQSEENDSEAGTSEESNIQSVQASVNEASITEPFPR 1195
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca02g02450 1195 ProSitePatterns Serine/Threonine protein kinases active-site signature. 986 998 IPR008271 GO:0004672|GO:0006468
Cca02g02450 1195 PANTHER CYSTEINE-RICH RECEPTOR-KINASE-LIKE PROTEIN 573 1174 - -
Cca02g02450 1195 PANTHER CYSTEINE-RICH RECEPTOR-KINASE-LIKE PROTEIN 40 228 - -
Cca02g02450 1195 MobiDBLite consensus disorder prediction 1161 1188 - -
Cca02g02450 1195 Pfam Protein kinase domain 321 521 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca02g02450 1195 Gene3D Transferase(Phosphotransferase) domain 1 399 572 - -
Cca02g02450 1195 CDD STKc_IRAK 871 1136 - -
Cca02g02450 1195 ProSiteProfiles Protein kinase domain profile. 319 570 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca02g02450 1195 PANTHER CYSTEINE-RICH RECEPTOR-KINASE-LIKE PROTEIN 247 576 - -
Cca02g02450 1195 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 247 576 - -
Cca02g02450 1195 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 40 228 - -
Cca02g02450 1195 SUPERFAMILY Protein kinase-like (PK-like) 302 562 IPR011009 -
Cca02g02450 1195 Gene3D - 573 655 IPR038408 -
Cca02g02450 1195 Gene3D - 665 769 IPR038408 -
Cca02g02450 1195 Gene3D - 144 237 IPR038408 -
Cca02g02450 1195 Gene3D - 32 136 IPR038408 -
Cca02g02450 1195 SUPERFAMILY Protein kinase-like (PK-like) 855 1160 IPR011009 -
Cca02g02450 1195 SMART serkin_6 865 1139 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca02g02450 1195 SMART serkin_6 319 633 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca02g02450 1195 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 573 1174 - -
Cca02g02450 1195 Gene3D Transferase(Phosphotransferase) domain 1 941 1142 - -
Cca02g02450 1195 ProSiteProfiles Protein kinase domain profile. 865 1150 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca02g02450 1195 Gene3D Phosphorylase Kinase; domain 1 282 394 - -
Cca02g02450 1195 Gene3D Phosphorylase Kinase; domain 1 829 940 - -
Cca02g02450 1195 ProSitePatterns Protein kinases ATP-binding region signature. 325 348 IPR017441 GO:0005524
Cca02g02450 1195 Pfam Protein tyrosine and serine/threonine kinase 869 1132 IPR001245 GO:0004672|GO:0006468
Cca02g02450 1195 ProSiteProfiles Gnk2-homologous domain profile. 32 136 IPR002902 -
Cca02g02450 1195 ProSiteProfiles Gnk2-homologous domain profile. 662 769 IPR002902 -
Cca02g02450 1195 ProSiteProfiles Gnk2-homologous domain profile. 553 656 IPR002902 -
Cca02g02450 1195 MobiDBLite consensus disorder prediction 1161 1195 - -
Cca02g02450 1195 ProSiteProfiles Gnk2-homologous domain profile. 141 256 IPR002902 -
Cca02g02450 1195 ProSitePatterns Serine/Threonine protein kinases active-site signature. 440 452 IPR008271 GO:0004672|GO:0006468
Cca02g02450 1195 Pfam Salt stress response/antifungal 38 133 IPR002902 -
Cca02g02450 1195 Pfam Salt stress response/antifungal 670 766 IPR002902 -
Cca02g02450 1195 Pfam Salt stress response/antifungal 158 222 IPR002902 -
Cca02g02450 1195 Pfam Salt stress response/antifungal 573 653 IPR002902 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca02g02450 Cca-Chr2 45588660 45618845 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca02g02450 4 572 Receptor kinase-like Gene Family AT4G38830 38.880 3.79e-130 412
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Cca02g02450 PK_Tyr_Ser-Thr 3.9e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca02g02450 - - pvu:PHAVU_007G050300g 1365.9