Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca02g02449 ATGATGTTTGGGTGCCGCAGCAACATGTTCCTCTTCAACAACAACCATGTTCTCGTTAGTACCTTTCTTCTCTTCCTATCTCTGTTTCGTTCCTCAGCAACTCCCATTTACAACGCCAATTACTGCCCAAGCAACGCATCGTACCAATCCAACGCAACTTTCGAAGCCAATCTAAGGGTTCTCCTCGCCTCTCTCGTCTCCAACGTTTCCAATTCTGACGGCTCCTATTACTCGGCCATGGGCATGGGAACCACAAGCGTCGCCAACGGCCAATTCCTCTGCCGCGGCGACCTCTCCATCGCCACGTGTCAGGACTGCATCACCACCGCCGCCACCGAGATAAGGCGCCGCTGCCCCAACAAAACGGAGTCCGTCATATGGTACGACGAGTGCACGCTCCGTTTCACCAACCTATACTTCGCTCCCACCACCGTCTTCCCTGGAGCGATGTTGCCGGATGACAAGAACATCTCTGCCTCCGACATGGACAGTTTCAACCGCACGTTGTTCGGTTTGTTGAACGACTTGGTAGAAGAGACTGCGAATTCCCACTCGGCGAGGAAATTCTCCGCCGGCGAAAGCGAATTCGCGAGGTCCTCGACGGTGTATGGGTTCATGGAGTGCGAGCCGGACTTAACGAGTGCTCAGTGTAAGGAGTGTTTGCAAAACGCCGTTTCGACGCTTCCGTCGTGCTGCGGAGGCAAACAGGGCGCGAGGGCTCTGCTTGTGTGGTGCAGTGTTAGATACGAATTGTACCGTTTTTACAATACTACCGACAAATCGCCTTCTTCAGGAAATAATAAATCTGTATTACGAATAGTCTTGATTGTTGTCTCTGTTGTTGTGTGGATAATTCTCTTGTGCTGTATCGGCTATTTCATATTGAAAAGATCCAGGAAGAAATACAGAACTCTTCTGAGGGAAAATTTTGGAGAAGAAAGCGCCACTTTAGAGTCTTTACAATTTAGCTTGACCACAATTGAAACTGCCACAAAAAGGTTTTCACATGAAAATAAAATAGGTGAAGGTGGATTTGGGGCAGTTTATAAGGCTATCCTACCGGATGGACGAGAAATAGCCGTTAAAAAACTCTCACAAGGATCGGGACAAGGTGCAACAGAATTTAAAAATGAGATTTTATTGATAGCAAAACTTCAACATAGAAATTTAGTCACATTGCTTGGATTTTGTTTGGAAGAACAAGAGAAAATGCTTATTTATGAATTTGTACCCAATAAAAGTCTTGACTACTTCCTATTTGATCCCTATAAAAGTAGCCAAATGAGTTGGTCACAACGCTACAAAATTATTGAAGGAATTACACAAGGAATTCTATATTTACATGAACATTCACGATTAAAAGTTATACACCGAGATCTTAAACCTAGTAATGTATTATTGGATAATAACATGAATCCAAAGATTTCAGATTTTGGAATGGCAAGGATTGTCGCTATAGATCAACATCAAGGAAAAACAAATAGAATCGTCGGAACATATGGTTATATGTCTCCAGAATATGCAATGCGTGGAGAATTTTCTGAGAAATCAGATGTTTATAGTTTCGGAGTTATAATTTTGGAGATAATTAGCGCAAAAAGAAACATGAGTTCTAATTTTCCAGATCATGATGACCTCTTGAGTTATGCTTGGGAACAATGGAGAGGTCAAACACTATTAAACATATTAGACTCAAATATTAAGGAATCTTGCGATCAGAGTGAAGTCATTAAATGCATCCAAATTGGTTTATTATGTGTACAAGAGAAGCCATACGACAGGCCTACAATGACACAAGTTATTTCATATCTCAGTAGTTCTATAACCGAGTTGCCATATCCTGAAAAACCAATTAATTCTAAACAAAGTGGAATAGTTCAAAAAAGGATGGTAGGAGAATCGAGTTCAGGTTCGACATTATCAAATAATGAAATGTCTCTGAGCATGTTTTTTCCTCGATAA 1962 0.42 MMFGCRSNMFLFNNNHVLVSTFLLFLSLFRSSATPIYNANYCPSNASYQSNATFEANLRVLLASLVSNVSNSDGSYYSAMGMGTTSVANGQFLCRGDLSIATCQDCITTAATEIRRRCPNKTESVIWYDECTLRFTNLYFAPTTVFPGAMLPDDKNISASDMDSFNRTLFGLLNDLVEETANSHSARKFSAGESEFARSSTVYGFMECEPDLTSAQCKECLQNAVSTLPSCCGGKQGARALLVWCSVRYELYRFYNTTDKSPSSGNNKSVLRIVLIVVSVVVWIILLCCIGYFILKRSRKKYRTLLRENFGEESATLESLQFSLTTIETATKRFSHENKIGEGGFGAVYKAILPDGREIAVKKLSQGSGQGATEFKNEILLIAKLQHRNLVTLLGFCLEEQEKMLIYEFVPNKSLDYFLFDPYKSSQMSWSQRYKIIEGITQGILYLHEHSRLKVIHRDLKPSNVLLDNNMNPKISDFGMARIVAIDQHQGKTNRIVGTYGYMSPEYAMRGEFSEKSDVYSFGVIILEIISAKRNMSSNFPDHDDLLSYAWEQWRGQTLLNILDSNIKESCDQSEVIKCIQIGLLCVQEKPYDRPTMTQVISYLSSSITELPYPEKPINSKQSGIVQKRMVGESSSGSTLSNNEMSLSMFFPR 653
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca02g02449 653 Gene3D Transferase(Phosphotransferase) domain 1 410 618 - -
Cca02g02449 653 Pfam Salt stress response/antifungal 160 252 IPR002902 -
Cca02g02449 653 Pfam Salt stress response/antifungal 42 137 IPR002902 -
Cca02g02449 653 Gene3D Phosphorylase Kinase; domain 1 296 409 - -
Cca02g02449 653 SMART serkin_6 334 604 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca02g02449 653 ProSiteProfiles Gnk2-homologous domain profile. 145 254 IPR002902 -
Cca02g02449 653 Gene3D - 152 254 IPR038408 -
Cca02g02449 653 Gene3D - 36 140 IPR038408 -
Cca02g02449 653 CDD STKc_IRAK 340 604 - -
Cca02g02449 653 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 21 653 - -
Cca02g02449 653 SUPERFAMILY Protein kinase-like (PK-like) 318 618 IPR011009 -
Cca02g02449 653 ProSitePatterns Serine/Threonine protein kinases active-site signature. 455 467 IPR008271 GO:0004672|GO:0006468
Cca02g02449 653 ProSitePatterns Protein kinases ATP-binding region signature. 340 363 IPR017441 GO:0005524
Cca02g02449 653 PANTHER CYSTEINE-RICH RECEPTOR-KINASE-LIKE PROTEIN 21 653 - -
Cca02g02449 653 Pfam Protein kinase domain 335 601 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca02g02449 653 ProSiteProfiles Gnk2-homologous domain profile. 36 140 IPR002902 -
Cca02g02449 653 ProSiteProfiles Protein kinase domain profile. 334 608 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca02g02449 Cca-Chr2 45579525 45583245 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca02g02449 12 653 Receptor kinase-like Gene Family AT4G05200 42.774 0.0 540
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Cca02g02449 Pkinase 3.9e-49 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca02g02449 - - ccaj:109813299 1256.12