Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca02g02446 ATGTGTATTTTCAGAAGCTCTTCAAGGCACTTGTTACTTGTCTCTGTGTTTGTATTGCTGAACTATGCAAGTGAAGCAGCTCCTACATACAGCGCACATGCCTGCACAAGTGGATCCTATTACCGACCCAACACAAGATTCCAAACCAACTTGAACCTCCTCCTCTCGTCCCTCGTCTCCAACGCCACCCTCCACGACGGCTTCTACCGCACCAACATCTCCCTCGGAAACCCCGACGAGGTCAAGGGACTCTTCCTCTGCCGCGGCGACGTCACCACCCCCTCCGTCTGCCACGACTGCGTAGCCGCCGCAGCAAAAAACATCACACAGCTGTGCACCAACCAGACTGAGTCCATAATCTGGTACGACGAATGCACGCTGCGTTACTCCAACCTTTCCTTCCTCAACAACATAGTTCCAAGTGTTAACTTGGAAAACACACAGAGCATCCCTCAATCCGACGCTTCCCGCTTCAACGATCTTCTCGCAGCCACGTTGACCGACGTAGTGCAGGAAGCCGTCAATTCTCTTTCAGGTCACAAGTTTGCTACAAAAGAAGCGGATTTCACGAGCTCCATCAAGTTGTACACACTGGCGGAGTGCACGCCCGATCTGTCCACCTTTGACTGTAACATGTGCCTCTCAGGCGCCAAAAGCTCCCTCGGTAATGGAAAACGTGGTGCACGCTCCCTGCTTCCGTCTTGTAATCTAAGATATGAATTGTACCCTTTTTACAATGCTTCCGCCGTCTCCACTCACCCAGACCTTCCCCCTCCATCTTCAGGAAAAAGCAGTATCTCTCTAATTGTGGCCATTGTTGTCCCCATTGTTGTTGTGCTTGTTCTTTTCATCGTTGGCGTCTGCTTCCTACGTAAGAGGGCAAGCAAGAAGTATAATACTTTTGTCCAGGATTCAATTGCGGATGATCTCACTGATGTGGAGTCCTTGCAATTTGACTTGGCTACAGTTGAAGCAGCCACAGACAGATTCTCAGATGAGAACAAGATTGGACAGGGTGGATTTGGGGTAGTTTATAAGGGCGTCCTCCCTAATGGACAGGAGATAGCTGTGAAGAGGTTGTCGGTAACCTCCTTGCAGGGTGCAGTAGAGTTCAGGAATGAAGCTGCCCTTGTGGCCAAGCTTCAACATAGAAATTTAGTGAGACTATTGGGATTTTGCTTGGAGGGTCGGGAGAAGATCCTTATCTACGAATACATACCAAATAAAAGTCTTGATCACTTTCTATTTGATCCTGTAAAGCAAAGAGAGTTAGATTGGTCAAGACGCTACAAGATTATAGATGGCATTGCTCGAGGAATTCTTTATCTACACGAAGATTCCCAACTTAGAATTATACACCGTGATTTGAAAGCCAGCAATGTTTTATTAGATGAAAATATGAATCCAAAAATTTCAGATTTTGGCATGGCAAAAATTTTCCAGGCAGATCAGGGGCAAGTGAATACAGGAAGGATAGTTGGAACTTATGGTTACATGTCTCCAGAATACGCAATGCGTGGACAGTTCTCTGTGAAATCAGATGTGTTTAGTTTTGGTGTTTTAGTTTTGGAGATTGTGAGTGGCAAAAAGAACACTGACTTTTATCAATCGAATCGGGTTGATGACCTCTTAAAACATGCTTGGAAGAATTGGACAGAGAAAACACCTTTGGAGTTTCTGGATCCAACTCTGAGAGGCTCTTATTCAAGAAATGAAGTCAACAGATGCATCCATATTGGTTTATTGTGTGTTCAGGAAAATCCATCTGACAGGCCTTCGATGGCCACTATTGCACTTATGCTGAACAGTTATTCAGTTACCATGTCAATGCCACGACAGCCAGCATCTTTTTTGCGTGGAAGAAGCCCTAATAACGGGCTAAACCAAGGGCTTGACTCTGATCAGTCTAGCACTGATCGGTCTACCACCTGTTCAATTCCATGGTCTGTGAATGAAGTATCCATTACTGAAGTATACCCTCGCTAA 1986 0.4587 MCIFRSSSRHLLLVSVFVLLNYASEAAPTYSAHACTSGSYYRPNTRFQTNLNLLLSSLVSNATLHDGFYRTNISLGNPDEVKGLFLCRGDVTTPSVCHDCVAAAAKNITQLCTNQTESIIWYDECTLRYSNLSFLNNIVPSVNLENTQSIPQSDASRFNDLLAATLTDVVQEAVNSLSGHKFATKEADFTSSIKLYTLAECTPDLSTFDCNMCLSGAKSSLGNGKRGARSLLPSCNLRYELYPFYNASAVSTHPDLPPPSSGKSSISLIVAIVVPIVVVLVLFIVGVCFLRKRASKKYNTFVQDSIADDLTDVESLQFDLATVEAATDRFSDENKIGQGGFGVVYKGVLPNGQEIAVKRLSVTSLQGAVEFRNEAALVAKLQHRNLVRLLGFCLEGREKILIYEYIPNKSLDHFLFDPVKQRELDWSRRYKIIDGIARGILYLHEDSQLRIIHRDLKASNVLLDENMNPKISDFGMAKIFQADQGQVNTGRIVGTYGYMSPEYAMRGQFSVKSDVFSFGVLVLEIVSGKKNTDFYQSNRVDDLLKHAWKNWTEKTPLEFLDPTLRGSYSRNEVNRCIHIGLLCVQENPSDRPSMATIALMLNSYSVTMSMPRQPASFLRGRSPNNGLNQGLDSDQSSTDRSTTCSIPWSVNEVSITEVYPR 661
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca02g02446 661 CDD STKc_IRAK 336 602 - -
Cca02g02446 661 Gene3D - 141 244 IPR038408 -
Cca02g02446 661 Gene3D - 28 134 IPR038408 -
Cca02g02446 661 ProSiteProfiles Gnk2-homologous domain profile. 29 134 IPR002902 -
Cca02g02446 661 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 7 660 - -
Cca02g02446 661 MobiDBLite consensus disorder prediction 615 644 - -
Cca02g02446 661 ProSiteProfiles Protein kinase domain profile. 330 605 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca02g02446 661 PANTHER CYSTEINE-RICH RECEPTOR-KINASE-LIKE PROTEIN 7 660 - -
Cca02g02446 661 Pfam Salt stress response/antifungal 153 242 IPR002902 -
Cca02g02446 661 Pfam Salt stress response/antifungal 35 131 IPR002902 -
Cca02g02446 661 Pfam Protein tyrosine and serine/threonine kinase 333 598 IPR001245 GO:0004672|GO:0006468
Cca02g02446 661 Gene3D Phosphorylase Kinase; domain 1 291 405 - -
Cca02g02446 661 ProSiteProfiles Gnk2-homologous domain profile. 138 244 IPR002902 -
Cca02g02446 661 ProSitePatterns Serine/Threonine protein kinases active-site signature. 451 463 IPR008271 GO:0004672|GO:0006468
Cca02g02446 661 SMART serkin_6 330 605 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca02g02446 661 ProSitePatterns Protein kinases ATP-binding region signature. 336 358 IPR017441 GO:0005524
Cca02g02446 661 SUPERFAMILY Protein kinase-like (PK-like) 316 622 IPR011009 -
Cca02g02446 661 Gene3D Transferase(Phosphotransferase) domain 1 406 613 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca02g02446 Cca-Chr2 45550458 45554116 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca02g02446 7 661 Receptor kinase-like Gene Family AT4G05200 49.780 0.0 644
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Cca02g02446 PK_Tyr_Ser-Thr 9.3e-49 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca02g02446 - - gmx:113000776 1059.67