LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Cca02g02444	ATGTCTAGGAATTGCTTGAAGCTCCTCTTTCTCTTTGTCCTCAGTTTGGCAACAACTAAGGCACAGGGTCCAACTTTTCTTTACCAGGATTGCTCAAGCAACGGAACCACAGCCAACAGCACCTTCCAATTAAACCTCAGGaccctcttctcttcactctcttccaacgccaccgccaacaacgaattccacaacaccacagtcgcaggaacaaacccctccgacacactctatggacttttcatgtgcagaggtgacgtctcatttcagcagtgtggacagtgcgtcgaaaacgccacacagaaactatcatcagacaccaagtgctccctgtccaaacacgccgtcatctggtacgacgagtgcatggttcgctattccaaccgctcctttttctccaccgtagacacaactcctactgttggcctttcaaacaccgccaatatctcaaaccaagcaagcttcatgcgtttgatgttcgacaccatgaaccaaaCAGCAGATGAAGCAGCCACTTCTCCTATTGGTGCCAAGAAATACGCCACCAATCAAGCAAACATATCAGGTTTTCAGACCCTTTATTGTTTGGTTCAGTGCACGCAGGACTTGTCACCACAAGATTGCAGAAGTTGTCTTAGTGTTGCCATAGGGCAACTTTCATGGTGCTGTGAAGGGAAACAGGGAGGGAGAATTCTAAATCCTAGCTGTAATGTTAGGTATGATTTGTACCCTTTTTATCGCACAAACACCACTCCACCATCAGCCTCTCTTCCTCCAACTCCAACCACTTCTTCCAACTCCGGAGAAAGTGGTGGGATCTCATCGGGGACAATTGTTGCAATTGTGGTTCCAATTACTGTGGTTGTGTTGCTATTTATTGCTGGCATTTGGCTCTTAAGTAAAAGAGCAGCAAAGAAGCATGACTCTGCGCAAGACCCAAAAACTGGAACTGAGATCAGTGCAGTGGAATCCTTGAGATTTGATTTCAGTACAATTGAAGCAGCCACAAATAAATTCTCTGATGCTAACAAGCTAGGTCAAGGTGGATTTGGTGACGTTTACAAGGGCTTGCTCCCAAGTGGACAAGAAGTAGCTGTCAAGAGACTCTCTAAAAACTCTGGACAAGGTGGAGTGGAATTTAAGAATGAAGTAGAGGTGGTTGCAAAGCTTCAACACAGAAATTTGGTGAGGCTTCTAGGATTTTGCTTGGAAGGAGAAGAAAAGATACTTATTTACGAATTTGTAGCCAACAAAAGCCTTGACTATATTCTTTTTGATCATGAAAAGCAAAGATCATTGGATTGGACAAGGCGTTACAAAATTATTGGAGGAATTGCTCGAGGCATTCAATATCTTCATGAAGATTCTAGGCTTAAAATTATACATCGTGATCTTAAAACTAGCAATGTTTTGTTGGATGGAGATATGAATCCAAAAATCTCAGATTTTGGCATGGCAAGAATATTTGGAGTAGATCAAACTCAAGCAAATACCAATAGGATTGTAGGGACATATGGTTACATGTCTCCTGAGTATGCAATGCATGGAGAATATTCAGTTAAGTCTGATGTATACAGTTTTGGGGTCCTCATTTTTGAGATTATAAGTGGCAAGAAGAACAACTCTTTTTATGAAACAGACGTTGCTGAGGATCTATTGAGCTATGCTTGGAAACTGTGGAAGGATGAAGCACCCTTTGAGTTGATGGACCACTCATTAAGAGAATCATATACTCCAAATGAAGTTATCAGATGTATCCATATTGGTTTACTCTGTGTCCAAGAAGATCCAGCAGATAGACCTACAATGGCATCAGTGGTTCTTATGCTTGATAGTTACTCAGTCACTCTACCGGTACCTAATCAGCCTGCATTCTTTGTAAATAGTAAAACTGAACCAAACATGCCAAAGGCGATTAAAATTGACCAGTCTACTACCAATTCAGCAACAAAGTCTGTCAATGAGATGTCGGTTAGTGAATTAGATCCTCGATAA	1995	0.3353	MSRNCLKLLFLFVLSLATTKAQGPTFLYQDCSSNGTTANSTFQLNLRTLFSSLSSNATANNEFHNTTVAGTNPSDTLYGLFMCRGDVSFQQCGQCVENATQKLSSDTKCSLSKHAVIWYDECMVRYSNRSFFSTVDTTPTVGLSNTANISNQASFMRLMFDTMNQTADEAATSPIGAKKYATNQANISGFQTLYCLVQCTQDLSPQDCRSCLSVAIGQLSWCCEGKQGGRILNPSCNVRYDLYPFYRTNTTPPSASLPPTPTTSSNSGESGGISSGTIVAIVVPITVVVLLFIAGIWLLSKRAAKKHDSAQDPKTGTEISAVESLRFDFSTIEAATNKFSDANKLGQGGFGDVYKGLLPSGQEVAVKRLSKNSGQGGVEFKNEVEVVAKLQHRNLVRLLGFCLEGEEKILIYEFVANKSLDYILFDHEKQRSLDWTRRYKIIGGIARGIQYLHEDSRLKIIHRDLKTSNVLLDGDMNPKISDFGMARIFGVDQTQANTNRIVGTYGYMSPEYAMHGEYSVKSDVYSFGVLIFEIISGKKNNSFYETDVAEDLLSYAWKLWKDEAPFELMDHSLRESYTPNEVIRCIHIGLLCVQEDPADRPTMASVVLMLDSYSVTLPVPNQPAFFVNSKTEPNMPKAIKIDQSTTNSATKSVNEMSVSELDPR	664

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Cca02g02444	664	ProSiteProfiles	Gnk2-homologous domain profile.	24	131	IPR002902	-
	Cca02g02444	664	Pfam	Salt stress response/antifungal	148	242	IPR002902	-
	Cca02g02444	664	Pfam	Salt stress response/antifungal	31	128	IPR002902	-
	Cca02g02444	664	Pfam	Protein tyrosine and serine/threonine kinase	343	608	IPR001245	GO:0004672\|GO:0006468
	Cca02g02444	664	Gene3D	Phosphorylase Kinase; domain 1	300	414	-	-
	Cca02g02444	664	ProSitePatterns	Protein kinases ATP-binding region signature.	345	367	IPR017441	GO:0005524
	Cca02g02444	664	PANTHER	CYSTEINE-RICH RECEPTOR-KINASE-LIKE PROTEIN	5	662	-	-
	Cca02g02444	664	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	460	472	IPR008271	GO:0004672\|GO:0006468
	Cca02g02444	664	SMART	serkin_6	339	614	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Cca02g02444	664	MobiDBLite	consensus disorder prediction	643	664	-	-
	Cca02g02444	664	SUPERFAMILY	Protein kinase-like (PK-like)	324	633	IPR011009	-
	Cca02g02444	664	MobiDBLite	consensus disorder prediction	643	657	-	-
	Cca02g02444	664	Gene3D	-	23	131	IPR038408	-
	Cca02g02444	664	Gene3D	-	138	245	IPR038408	-
	Cca02g02444	664	CDD	STKc_IRAK	345	611	-	-
	Cca02g02444	664	ProSiteProfiles	Protein kinase domain profile.	339	625	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Cca02g02444	664	PANTHER	RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8	5	662	-	-
	Cca02g02444	664	ProSiteProfiles	Gnk2-homologous domain profile.	137	245	IPR002902	-
	Cca02g02444	664	Gene3D	Transferase(Phosphotransferase) domain 1	415	618	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Cca02g02444	Cca-Chr2	45543047	45546384	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Cca02g02444	3	664	Receptor kinase-like Gene Family	AT4G05200	51.929	0.0	694

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_DLSV	Cca02g02444		PK_Tyr_Ser-Thr	4.4e-49	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Cca02g02444	-		-	gsj:114402115	1101.27