Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca02g02442 ATGTCCTCCTCCATCGCCACCCTTTCCGATTTCTTCAACTATTCGATTAAGGGAGTTGAAAACCCTCACAATTTGCCACACCATCCCCAAATGGTACCCTATGCCACCCATCATGACACTGATCCGCACCATCCACACCTTCAGCACCAATCGATCAAACATGGCTACCCTAACTATTCTTCATccaagaccaaacaaccccaacaacaacaacaacaaAGCACTCTCAGTGATGAGGATGAgcggcggttagggtttctgagcagaagagaagTTGATGCAGCAGCTCGCCGACAACGACCCCAACCGCTATGGCACGCCGCCTGCCGCCAAGGACGTCGTCAAGAACCTCCCCACCGTCACCGTCGACGAAGACATGCTGAACTCGGAGCTGAACCAGTGTGCGGTTTGCCAGGAGAGTTCGAGAAGGGGTCGCATGTGATGCAAATGCCCTGCAAGCACGTGTACCACGGTGATTGCTTGATTCCCTGGCTTCGCCTGCACAACTCTTGCCCCGTGTGCCAGTACGAATTGCCCACGGACGACGCCGATTACGAGAATCGGACGCAGGGGAACGCCGATGATGGGTCGAGGTCCAGTGGGAGAGATAGTGGTGGCAGCGACAATGGCGGTGCAGGTGCAAGGGGGAGTAACAGGCCTGTTCACAGGACTTTTAGAATATATCTGGGGAATCCTTTTGATGCAGGTGGGTCTGCGCACGACAGCGGGGAAAGGAGATGGAGGAATTTTCCAGAAGATATGGATTAA 768 0.4948 MSSSIATLSDFFNYSIKGVENPHNLPHHPQMVPYATHHDTDPHHPHLQHQSIKHGYPNYSSSKTKQPQQQQQQSTLSDEDERRLGFLSRREVDAAARRQRPQPLWHAACRQGRRQEPPHRHRRRRHAELGAEPVCGLPGEFEKGSHVMQMPCKHVYHGDCLIPWLRLHNSCPVCQYELPTDDADYENRTQGNADDGSRSSGRDSGGSDNGGAGARGSNRPVHRTFRIYLGNPFDAGGSAHDSGERRWRNFPEDMD 255
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca02g02442 255 Pfam Ring finger domain 134 175 IPR001841 -
Cca02g02442 255 MobiDBLite consensus disorder prediction 76 97 - -
Cca02g02442 255 MobiDBLite consensus disorder prediction 239 255 - -
Cca02g02442 255 SUPERFAMILY RING/U-box 140 181 - -
Cca02g02442 255 MobiDBLite consensus disorder prediction 23 127 - -
Cca02g02442 255 MobiDBLite consensus disorder prediction 192 206 - -
Cca02g02442 255 MobiDBLite consensus disorder prediction 185 255 - -
Cca02g02442 255 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 140 235 - -
Cca02g02442 255 ProSiteProfiles Zinc finger RING-type profile. 133 175 IPR001841 -
Cca02g02442 255 PANTHER OS06G0101300 PROTEIN 140 235 - -
Cca02g02442 255 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 124 192 IPR013083 -
Cca02g02442 255 MobiDBLite consensus disorder prediction 53 75 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca02g02442 Cca-Chr2 45538424 45540477 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca02g02442 134 186 C3H Transcription Factor Family AT5G01980 53.704 1.56e-15 73.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca02g02442 K11982 - gmx:100785289 147.517