Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca02g02441 ATGTTGCAGCGTTACAGAATCATGATTGCCAAGTCCAAAAAGAGTCTAATACCCTTCCTACTTTGCATTCTTTTTCTCACCGTTACAGAAACCTCAGCATCAGTGTTCAACAACGTTAGCTGCACCAGCAACAACACTTTCACTCCCAACAGCGCCTTCAGCGCCAACCTCAACacccttctctcttccctttcctccaacgccaccaacagcgttaggttcttcaacgcaacagcaggggaggattctaacaccgtctatggcctctacatgtgccgtggagacgtgccgtttgctctatgcagagagtgtgtgggtttcgctacgcaaaccatagcgtcgtcgtgtcccgcggcaaaagaagctgtgatttggttcaacgagtgtttgttgcgctactcttataggttattcttctccaaaatggaagagtggccGAGGTACCAGATCAAGATCCCGTTGGGGGATCCTGTGGTTTTGCACAGTGTTGGCTTCTACACTGCGTTAGGTTCCATTTTCAGTGAACTATCACATGCAGCGGCACTGGCTCTCGGAGAGTCTAATAATCCATACGCTGTTAAGCAAGAAAACGCTTCTGCGAGTGTTACCCTTTATGGCCTCGCTCAGTGCACGCCGGACTTGTCCGCCGGCGACTGCAAACGGTGTGTGGCCGACGCGGCGGCGGGATTCGCCAAGTCCTGTTGCGGAGGGAGCATAGGGGCGAGTGTTCTGTTTCCCAGTTGCATTGTGCGGTATGAAACGTACCCGTTTTATCAGCACTCCGGAATCTCTGCGCCGACAATGGTTAAGGGTAAATCAAATATTGGAACTGAAGTGATTGCGATCGTTATTGTCTTGGTTATCGTTTTGATGATGATTTTTTGCTCTGGCTATGGTTTCATCTGGATAAAAGCAAGAAAGAAACGCAAGGCCAGTGTCAGAGAAAACTTTGAGCCAGAAATAAAAACTACCTTGGAGTCCTTGGAATTTGATTTGGCTACAATTGAAGCTGCGACAAACAAGTTTTCTGAAGACCGCAGGATCGGCAAAGGGGGTTACGGAGAAGTCTACAAGGGAATCCTTCCTGACGGAGAAGAAATAGCCGTAAAGAGATTGTCAACAAGTTCTCGGCAAGGAATGGAGGAATTCAAAAACGAAGTGTTGTTAATAGCTAAACTTCAACACAAAAATTTGGTGAGATTAATAGGATTTTGTCAAGAAGACCAGGAGAAACTACTTATCTATGAATATGTCCCTAACAAGAGCCTTGATCACTTCCTATTTGATTCCCAGAAGCGAAGACAATTAACTTGGTCAGAGCGATATAAAATCATAAAAGGAATTGCAAGAGGAATTCTTTATCTTCATGAAGATTCTCGTCTTAAGATTATACACCGTGATATCAAGCCGAGCAATGTTCTATTGGACAATGACATCAATCCAAAAATATCTGATTTTGGAATGGCAAGGATGGTAGCTACGGACCAAATTCAAGGATGTACCAATAGAGTTGTGGGCACATATGGTTACATGTCTCCTGAATATGCAATGCATGGACAATTTTCTGAAAAATCTGATGTATTCAGTTTTGGGGTTATGATTCTTGAGATTATCAGTGGAAAGAAGAATTCATGTTCTTTTGAATCATGTCGCGTTGATGATCTCTTGAGTTATGCATGGAGTCAATGGAGGGATGAATCACCATTTGAATTGCTGGATCCAATTCTGCTAGAATCTTATAGTCCAAACGAAGTTGAAAAGTGTATACAGATTGGTTTATTGTGTGTGCAAGAAAATCCAGATGATAGGCCTAGAATGGGAACCATTATTTCATATCTTAGCAACCCTTCAATTGAAATGCCATTCCCTCTAGAACCAGCATTTTTCATGCATGGCAGAATGAGAAGACATTCAGCCGAACATAAATCATCTTCAGAATTTAGCCTAAAAAAATATTGGAAAGAATTGATGGGCTGGAGACAAACGTTCAAACGTGGCTTGCGGCATACTACGTAG 2016 0.3686 MLQRYRIMIAKSKKSLIPFLLCILFLTVTETSASVFNNVSCTSNNTFTPNSAFSANLNTLLSSLSSNATNSVRFFNATAGEDSNTVYGLYMCRGDVPFALCRECVGFATQTIASSCPAAKEAVIWFNECLLRYSYRLFFSKMEEWPRYQIKIPLGDPVVLHSVGFYTALGSIFSELSHAAALALGESNNPYAVKQENASASVTLYGLAQCTPDLSAGDCKRCVADAAAGFAKSCCGGSIGASVLFPSCIVRYETYPFYQHSGISAPTMVKGKSNIGTEVIAIVIVLVIVLMMIFCSGYGFIWIKARKKRKASVRENFEPEIKTTLESLEFDLATIEAATNKFSEDRRIGKGGYGEVYKGILPDGEEIAVKRLSTSSRQGMEEFKNEVLLIAKLQHKNLVRLIGFCQEDQEKLLIYEYVPNKSLDHFLFDSQKRRQLTWSERYKIIKGIARGILYLHEDSRLKIIHRDIKPSNVLLDNDINPKISDFGMARMVATDQIQGCTNRVVGTYGYMSPEYAMHGQFSEKSDVFSFGVMILEIISGKKNSCSFESCRVDDLLSYAWSQWRDESPFELLDPILLESYSPNEVEKCIQIGLLCVQENPDDRPRMGTIISYLSNPSIEMPFPLEPAFFMHGRMRRHSAEHKSSSEFSLKKYWKELMGWRQTFKRGLRHTT 671
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca02g02441 671 Pfam Protein kinase domain 343 545 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca02g02441 671 SMART serkin_6 342 613 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca02g02441 671 Gene3D Transferase(Phosphotransferase) domain 1 418 620 - -
Cca02g02441 671 Gene3D - 160 257 IPR038408 -
Cca02g02441 671 Gene3D - 34 138 IPR038408 -
Cca02g02441 671 ProSiteProfiles Protein kinase domain profile. 342 618 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca02g02441 671 ProSiteProfiles Gnk2-homologous domain profile. 146 257 IPR002902 -
Cca02g02441 671 CDD STKc_IRAK 348 613 - -
Cca02g02441 671 ProSiteProfiles Gnk2-homologous domain profile. 35 138 IPR002902 -
Cca02g02441 671 ProSitePatterns Serine/Threonine protein kinases active-site signature. 463 475 IPR008271 GO:0004672|GO:0006468
Cca02g02441 671 PANTHER CYSTEINE-RICH RECEPTOR-KINASE-LIKE PROTEIN 14 640 - -
Cca02g02441 671 Gene3D Phosphorylase Kinase; domain 1 302 417 - -
Cca02g02441 671 ProSitePatterns Protein kinases ATP-binding region signature. 348 370 IPR017441 GO:0005524
Cca02g02441 671 SUPERFAMILY Protein kinase-like (PK-like) 327 636 IPR011009 -
Cca02g02441 671 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 14 640 - -
Cca02g02441 671 Pfam Salt stress response/antifungal 165 255 IPR002902 -
Cca02g02441 671 Pfam Salt stress response/antifungal 41 134 IPR002902 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca02g02441 Cca-Chr2 45530380 45534979 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca02g02441 11 643 Receptor kinase-like Gene Family AT4G05200 44.294 0.0 560
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Cca02g02441 Pkinase 1e-49 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca02g02441 - - gmx:100791642 1087.4