Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca02g02439 ATGCATTACAACTGCAACCAAACAAATAGCCACGGTTCAGGTTCAATGATTATAACGTACGTAACGAACTCAACAAAGGAAGAAGGAAGCTATGGGTTCTGGTTGTTATCCAAAACGCTGAGTGATGCAGTGGGTGAGGCTGCGAATGCTGGTCCCGAGGGCACCAAGAAATTTGTAACAAAAAACGCTACCTTGCGTGGGTCTGAGAGAGTGTACACCCTAGTTCAGTGCACGCCGGATCTATCAAGCGAAGATTGCAGTAAGTGTTTGGGTGATATTATGAAAGATATTCCTTTGTGTTGTCTCGGAAGGATAGGTGGAATGGTTCTATATCCCAGCTGCACTTTGATGTTTGGGTTAAGACATTTCTACAGAGATGTTTCTTATTTCGTACACAGACAATCCCCACCACCAGAACCTTCAGGAAATAAAAAGAGTTTGCTACGAGCAATTATTATAGTTGTCATCGTCCTTGTTTTGGTGATGCTAAGCTCTTTTCTATTTCATTTCATACGGAGAAAAGCAAGAAAGAGCAATTATAAGATTCTTCTTAGGGAAAACTTTGGTCATGAAAGCGTCAACCTAGAGGCGCTACGAATTGATTTGGCTATAATTCAAGTAGCAACAAATAACTTTTCACATGAAAATATGATTGGCAAAGGTGGATTTGGAGAAGTTTACAAGGGTATTCTTCCTTGTGGACAACATATAGCTGTTAAAAGTCTTTCAATAAGTTCTCGACAAGGTTTGGTTGAATTCAAAAATGAGATTTTATTGATAGCCAAGTTACAACATAGAAACCTTGTGGAGTTAATAGGTTTTTGCCTAGAAGAGCAAGAGAAGATTCTTATATACAAATACATGCCTAATGGAAGCCTTGACAACTTCTTATTCGATACTCGACAAAGGAAGTTAAGTTGGTCTGAGCGCTATAAGATTATAGAAGGAATTGTTCAAGGAGTTATTTATTTGCATGAACATTCTCGACTTAAAGTTATACATCGTGATCTCAAACCTAGTAATATTCTATTAGATGAAAACATGAATCCTAAAATATCAGATTTTGGTATGGCTAGAATTATTGAAATAGATCAAGATCGTGGAAAAACCAGACGAATAGTTGGAACATATGGTTATATGCCTCCAGAGTATGCAATGCTTGGACAATTTTCTGAAAAGTCAGATGTTTTTAGCTTTGGAGTTATGGTTCTAGAGATTATTTCGGGAAAAAAAAATATAAGTTCTCATAAATCACAATATACTTCAGACAGTCTCATAAACTATGTATGGAGACAATGGAAGAATCAAACACCGTTAAGCATATTGGACCCTGTTTTAAAAGAAAATTATTCAAAAATTGAAGTCATCAAATGTATTCAAATTGGTTTATTATGTGTTCAAGAAAATAAAAATAATAGACCCACAATGACAGAAATTATCTCATATCTTGATGGACGCATACTTGATTTGCCATCTCCACAAGAACCGGCATTTTTCTGGTCAGAAAAGAGAGATCAAAAAATGACTACACAACATTTTTCTATTAATGAGATGTCTATAAGTACATATTATGCTCGATAA 1581 0.358 MHYNCNQTNSHGSGSMIITYVTNSTKEEGSYGFWLLSKTLSDAVGEAANAGPEGTKKFVTKNATLRGSERVYTLVQCTPDLSSEDCSKCLGDIMKDIPLCCLGRIGGMVLYPSCTLMFGLRHFYRDVSYFVHRQSPPPEPSGNKKSLLRAIIIVVIVLVLVMLSSFLFHFIRRKARKSNYKILLRENFGHESVNLEALRIDLAIIQVATNNFSHENMIGKGGFGEVYKGILPCGQHIAVKSLSISSRQGLVEFKNEILLIAKLQHRNLVELIGFCLEEQEKILIYKYMPNGSLDNFLFDTRQRKLSWSERYKIIEGIVQGVIYLHEHSRLKVIHRDLKPSNILLDENMNPKISDFGMARIIEIDQDRGKTRRIVGTYGYMPPEYAMLGQFSEKSDVFSFGVMVLEIISGKKNISSHKSQYTSDSLINYVWRQWKNQTPLSILDPVLKENYSKIEVIKCIQIGLLCVQENKNNRPTMTEIISYLDGRILDLPSPQEPAFFWSEKRDQKMTTQHFSINEMSISTYYAR 526
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca02g02439 526 Gene3D - 16 123 IPR038408 -
Cca02g02439 526 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 139 509 - -
Cca02g02439 526 SMART serkin_6 212 483 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca02g02439 526 PANTHER CYSTEINE-RICH RECEPTOR-KINASE-LIKE PROTEIN 139 509 - -
Cca02g02439 526 PANTHER CYSTEINE-RICH RECEPTOR-KINASE-LIKE PROTEIN 28 128 - -
Cca02g02439 526 ProSitePatterns Protein kinases ATP-binding region signature. 218 240 IPR017441 GO:0005524
Cca02g02439 526 ProSitePatterns Serine/Threonine protein kinases active-site signature. 332 344 IPR008271 GO:0004672|GO:0006468
Cca02g02439 526 Pfam Protein kinase domain 214 481 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca02g02439 526 ProSiteProfiles Protein kinase domain profile. 212 498 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca02g02439 526 SUPERFAMILY Protein kinase-like (PK-like) 197 516 IPR011009 -
Cca02g02439 526 ProSiteProfiles Gnk2-homologous domain profile. 15 123 IPR002902 -
Cca02g02439 526 CDD STKc_IRAK 218 485 - -
Cca02g02439 526 Gene3D Phosphorylase Kinase; domain 1 174 287 - -
Cca02g02439 526 Pfam Salt stress response/antifungal 36 118 IPR002902 -
Cca02g02439 526 Gene3D Transferase(Phosphotransferase) domain 1 288 489 - -
Cca02g02439 526 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 28 128 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca02g02439 Cca-Chr2 45513519 45517108 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca02g02439 35 522 Receptor kinase-like Gene Family AT3G45860 46.589 5.22e-146 433
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Cca02g02439 Pkinase 8.3e-50 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca02g02439 - - gmx:100792162 773.852