Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca02g02436 ATGGCTTCCTTCAAGCTTGTCTACTACCTCTTTACCCTTATCAGCTTTATCAATTTCGTAACCAATAAAGCACAGGTTGGCCATGGTGTTTCGGGCTTCTATTGTTCTGAGAACCTAACCACGCCAAACAGCTCGTTCCAGTCGAACGTGAGAAGCCTTCTCTCTGACTTATCCTCCCACGCCACCGCTAATAACAATCCATACTACAACACCACAGTCGCCACTGCAAACCACTCCCACACAGCCTATGGAATGTTCTTCTGCTCGGGTGACGTCCCCCCTCTCCCTTGTACCCAATGCGTCCTTAACGCCACCAAAAAAATACTCTCAGGCACATATTCGCATGCAAATTGTTCCTTGTCCACTGATGCATATTTTAAGTACGAGGACTGCATGATTCGCTTTTCCAACAGTTCTTTCTTCTCCACAGTTGACTTAAGTTCACCCGGAGGTTCATGCAGCATTTTGTATGAGGAAAACTTGACGAGTTTGGTTTCCAAAACGCTTAACGAAGCGGCAGACGAGGCAGCGAATTCTCCTATTGGTGCCAAGAAGTACGCCACAAAGCAAGCATTGATGGCTGGATTTAAGACCCTTTACTGTGTAGCTCAGTGCTCACCAGATCTGTCACCCCGAGATTGCAGAAAATGTCTAAATGTTGCCATCGATTATGTTCCAAAGAACTGTCAAGGAGGCTTACCGCAGTATGATAATCTCAGCTGTAATCTCAAGTGCGATTGGTACCCATTCTTTCGCCCCAGTACCGCTGCGGCACCAACACAACTCGTTCCGCTCACAAATCCTTCCAATACAGACTCACAACATTCTACTTATCTTTCCAAAAATTGTCCCCCCATCATCATCCCCGACCCCACTTTTCAATCGAGTCTCATAGCCCTCCTCTCGTACTTTTCTTCCAACTCCTCTACCACCAAAAACGGTTTCTTCGAGACCAAAGTCCACACTCTCACTGGTTTCTTCATGTGCTTTGGGGACTTCTCCCCCACTCTCTGTCACCAATGTGTCCTAAATGCAACCCAAACAATATCCTCGCAGTGCCCCTCCTCCAAAGAGGCTATCATTTGGTACAATCACTGTTTGCTTCATTATTCCGATCGCCCATCTCTCTCCGCACTAGATACAAGTCCTGCATATAAGCACTTGAATATCGTCAACTATACTTCCAATCCTAACCAGCTGCAAAGCTTCTTCACTTGGACTTTGGCGACTACTTTAAATGAATTGCAGTATGACACAGACGGCAATAGCAGTACCATTAAGAATTATGGGAAAAAACAAGTAAAACTGAATGATCACCAAACTCTCCATACTCTTGTTCAATGCACGCCAGACCAGCATAATTCGGATTGCACCCAGTGTCTAGTAAACATTGTCAACGAAATGCCATGGTGTTGTATGAAGATTCCAGAGGGAAGAGTACTGTATCCAAAATGCTATATGATGTTTGGATTGTCCCCGTTTGATGGATATGCTCCTCAAATTCAGCCGCTCAGGCCAGCTACAGGAAATCATACAGGTTGGGCACGAAAAATTATCTTAATTGGTATTGGTGTCCTCATCGTTGCTTCGACGACACTCCTCTCCTTTTGGTGCTACTTGCGAAGGACAAAAACAAGAAAAAATAATTACAAGAAACTTCTTAGAAAAAACTTTGGTCAAGAAAGTACCATTGTAGAGGGATTGCAATATGATTTGACTACAATTAAAGCAGCTACAAATAATTTTTCACACGAAAATAAGATTGGTAAAGGTGGATTTGGAGAAGTTTATAAGGTGAGAAACTGTGATAATTTTTCTTTTCCTTTCGATCATGTTTTCAATAATAATTATTTGTTTTTTCAGGGTATTCTAATTGATGGAAGACATATAGCTGTAAAGAGACTTTCAACTTGTTCTAAACAAGGTTCAATTGAATTTGTGAATGAGATTTTATTAATAGCCAAGCTACAACACAAAAATCTCGTGGCATTGATAGGTTTTTGTCTAGAAGAGCAAGAAAAAATTCTTATTTATGAATTCATGCCGAATGGAAGCCTTGATTATCTTTTATATGGTACTCAACAACAAAAGTTAAGTTGGTCTGAGCGCTATAAAATTATCAGAGGAACTGCTTTAGGAATTCTTTACTTACATGAATATTCACGACTTAAAGTTATACATCGTGATCTTAAACCTAGTAATGTTCTATTAGATGAAAATATGAACCCAAAAATATCAGATTTTGGCATGGCTAGAATTGTTGAAATGGATCAAGATCGTGGAAATACTAATAGAATTGTTGGAACATATGGTTATATGTCACCAGAATATGCAATGCTTGGAGAATTTTCTGAGAAATCAGATGTTTTTAGTTTTGGTGTCATGATTCTTGAGATTATTACTGGAAAAAGGAATGCACAATTTTATGATTCACACAATCTAGAGGAAGGCATCATAGCTTATGTTTGGAGACAATGGAAGAATAAAGACCTATTATGCATCTTGAATTCACACATAAAAGAAAGTTATTCACAAAAGGAAGTTTTCCAATGCATTCATATTGGTTTATTATGTGTTCAAGAAAATCCAAACATGAGACCTACAATGGCAACAATTATTTCGTATCTTAATAATTTGTCACTTGAATTGCCATTTCCACAAGAACCATCCTTTTTCTTGTACAGTCGTAGAATGGATTATGATACAGCTAGAAAACAAGAATCAAGTTCCAACCAAACTACTAATGGTTGCAAACAATTTTCTATCAATGAAATGTCCATGAGTAATTTTTATCCTCGTTAA 2802 0.3936 MASFKLVYYLFTLISFINFVTNKAQVGHGVSGFYCSENLTTPNSSFQSNVRSLLSDLSSHATANNNPYYNTTVATANHSHTAYGMFFCSGDVPPLPCTQCVLNATKKILSGTYSHANCSLSTDAYFKYEDCMIRFSNSSFFSTVDLSSPGGSCSILYEENLTSLVSKTLNEAADEAANSPIGAKKYATKQALMAGFKTLYCVAQCSPDLSPRDCRKCLNVAIDYVPKNCQGGLPQYDNLSCNLKCDWYPFFRPSTAAAPTQLVPLTNPSNTDSQHSTYLSKNCPPIIIPDPTFQSSLIALLSYFSSNSSTTKNGFFETKVHTLTGFFMCFGDFSPTLCHQCVLNATQTISSQCPSSKEAIIWYNHCLLHYSDRPSLSALDTSPAYKHLNIVNYTSNPNQLQSFFTWTLATTLNELQYDTDGNSSTIKNYGKKQVKLNDHQTLHTLVQCTPDQHNSDCTQCLVNIVNEMPWCCMKIPEGRVLYPKCYMMFGLSPFDGYAPQIQPLRPATGNHTGWARKIILIGIGVLIVASTTLLSFWCYLRRTKTRKNNYKKLLRKNFGQESTIVEGLQYDLTTIKAATNNFSHENKIGKGGFGEVYKVRNCDNFSFPFDHVFNNNYLFFQGILIDGRHIAVKRLSTCSKQGSIEFVNEILLIAKLQHKNLVALIGFCLEEQEKILIYEFMPNGSLDYLLYGTQQQKLSWSERYKIIRGTALGILYLHEYSRLKVIHRDLKPSNVLLDENMNPKISDFGMARIVEMDQDRGNTNRIVGTYGYMSPEYAMLGEFSEKSDVFSFGVMILEIITGKRNAQFYDSHNLEEGIIAYVWRQWKNKDLLCILNSHIKESYSQKEVFQCIHIGLLCVQENPNMRPTMATIISYLNNLSLELPFPQEPSFFLYSRRMDYDTARKQESSSNQTTNGCKQFSINEMSMSNFYPR 933
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca02g02436 933 ProSiteProfiles Gnk2-homologous domain profile. 275 375 IPR002902 -
Cca02g02436 933 SMART serkin_6 582 876 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca02g02436 933 Gene3D - 384 494 IPR038408 -
Cca02g02436 933 Gene3D - 30 140 IPR038408 -
Cca02g02436 933 Gene3D - 154 250 IPR038408 -
Cca02g02436 933 Gene3D - 277 374 IPR038408 -
Cca02g02436 933 PANTHER CYSTEINE-RICH RECEPTOR-KINASE-LIKE PROTEIN 273 494 - -
Cca02g02436 933 PANTHER CYSTEINE-RICH RECEPTOR-KINASE-LIKE PROTEIN 21 262 - -
Cca02g02436 933 SUPERFAMILY Protein kinase-like (PK-like) 566 902 IPR011009 -
Cca02g02436 933 ProSitePatterns Serine/Threonine protein kinases active-site signature. 725 737 IPR008271 GO:0004672|GO:0006468
Cca02g02436 933 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 620 915 - -
Cca02g02436 933 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 21 262 - -
Cca02g02436 933 PANTHER CYSTEINE-RICH RECEPTOR-KINASE-LIKE PROTEIN 620 915 - -
Cca02g02436 933 Gene3D Phosphorylase Kinase; domain 1 541 680 - -
Cca02g02436 933 PANTHER CYSTEINE-RICH RECEPTOR-KINASE-LIKE PROTEIN 509 598 - -
Cca02g02436 933 CDD STKc_IRAK 588 879 - -
Cca02g02436 933 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 273 494 - -
Cca02g02436 933 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 509 598 - -
Cca02g02436 933 Gene3D Transferase(Phosphotransferase) domain 1 681 883 - -
Cca02g02436 933 ProSiteProfiles Gnk2-homologous domain profile. 28 140 IPR002902 -
Cca02g02436 933 ProSiteProfiles Gnk2-homologous domain profile. 143 250 IPR002902 -
Cca02g02436 933 Pfam Protein tyrosine and serine/threonine kinase 585 876 IPR001245 GO:0004672|GO:0006468
Cca02g02436 933 ProSiteProfiles Gnk2-homologous domain profile. 386 494 IPR002902 -
Cca02g02436 933 ProSiteProfiles Protein kinase domain profile. 582 881 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca02g02436 933 Pfam Salt stress response/antifungal 400 489 IPR002902 -
Cca02g02436 933 Pfam Salt stress response/antifungal 291 372 IPR002902 -
Cca02g02436 933 Pfam Salt stress response/antifungal 157 244 IPR002902 -
Cca02g02436 933 Pfam Salt stress response/antifungal 35 137 IPR002902 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca02g02436 Cca-Chr2 45481376 45486032 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca02g02436 271 933 Receptor kinase-like Gene Family AT4G05200 37.936 2.06e-154 469
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Cca02g02436 PK_Tyr_Ser-Thr 2.2e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca02g02436 - - gmx:100792696 1134.4