LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Cca02g02427	ATGACAGAAATGATAACTTCAGAGGCCGTGGCAACTTTGGTGGTGGCCGTGGTGGCAAGTATGGAAGTAGGAATGATTTTGAGAAACGGGGTGAGTTCTCGGGACGACCTCGAGGAGGCAATAATGGTGGACGTAGCAATGGAGACGCTAGGCCAAGAAATTATCAGAATTATCTTGAAAGTCAATCCCTTGCGCAGTTCCCTATCTCTCTTCAAGATGCaaatcttcgttaagaccctcaccggcaagaccatcaccctcgaggtggaaagctctgacaccattgacaacgtcaaggctaagatccaggacaaggaaggaattcccccggaccagcaacgtctcatcttcgccggaaagcagctcgaggacggacgcaccctcgctgactacaacatccagaaggaatcaacccttcacctcgtcctccgtctccgtggtggcatgcagatcttcgttaagaccctcactggcaagacaatcaccctcgaggtcgaaagctccgacaccatcgacaacgtgaaaactaagatccaggacaaggaaggaatccccccagaccagcagaggttgatcttcgccggcaagcagctcgaggacggccgcaccctcgctgactataacatccagaaggagtcaactcttcacttggtgttgcgtcttcgtggtgCCACCAGGCTGGGGATTGTGACCCATCTTTTTCTAGATCTAGAGATGGCTGTATCTGTTAAAGCCGTTTCTCACGCTGGAAGAAACGCGAGATGGGAGATTCCTTTCTTTTTCTAG	786	0.2023	MTEMITSEAVATLVVAVVASMEVGMILRNGVSSRDDLEEAIMVDVAMETLGQEIIRIILKVNPLRSSLSLFKMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKTKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGATRLGIVTHLFLDLEMAVSVKAVSHAGRNARWEIPFFF	261

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Cca02g02427	261	SMART	ubq_7	73	144	IPR000626	GO:0005515
	Cca02g02427	261	SMART	ubq_7	149	220	IPR000626	GO:0005515
	Cca02g02427	261	CDD	Ubl_ubiquitin	149	223	-	-
	Cca02g02427	261	ProSitePatterns	Ubiquitin domain signature.	175	200	IPR019954	-
	Cca02g02427	261	ProSitePatterns	Ubiquitin domain signature.	99	124	IPR019954	-
	Cca02g02427	261	SUPERFAMILY	Ubiquitin-like	148	224	IPR029071	-
	Cca02g02427	261	CDD	Ubl_ubiquitin	73	148	-	-
	Cca02g02427	261	ProSiteProfiles	Ubiquitin domain profile.	73	148	IPR000626	GO:0005515
	Cca02g02427	261	PANTHER	-	72	226	-	-
	Cca02g02427	261	PANTHER	UBIQUITIN	72	226	-	-
	Cca02g02427	261	Pfam	Ubiquitin family	75	146	IPR000626	GO:0005515
	Cca02g02427	261	Pfam	Ubiquitin family	151	222	IPR000626	GO:0005515
	Cca02g02427	261	ProSiteProfiles	Ubiquitin domain profile.	149	224	IPR000626	GO:0005515
	Cca02g02427	261	PRINTS	Ubiquitin signature	104	124	IPR019956	-
	Cca02g02427	261	PRINTS	Ubiquitin signature	83	103	IPR019956	-
	Cca02g02427	261	PRINTS	Ubiquitin signature	125	146	IPR019956	-
	Cca02g02427	261	SUPERFAMILY	Ubiquitin-like	72	148	IPR029071	-
	Cca02g02427	261	Gene3D	-	69	148	-	-
	Cca02g02427	261	Gene3D	-	149	229	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Cca02g02427	Cca-Chr2	45338755	45344386	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Cca02g02427	149	224	Cytoplasmic Ribosomal Protein Gene Family	AT3G52590	97.368	3.71e-48	154

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Cca02g02427	-		K08770	pavi:110774095	300.056