Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca02g02421 ATGTATCACAGTCAGAATGCTTTCAATCCTCAGCAAGGGTTGCTGAACATGACATCCTCGGAGAATGATCCTTTGGGAAGGAACAGAGATGATATATCGAATGATATCGATACAATGGAAGCTCCCCCTTCCGGTGACGACCAAGATCTCGACCAAGCAGCAAGGAGGAAGCGTTATCATCGCCACACACAACATCAAATTCAAGAAATGGAATCATTCTTCAAGGAATGCCCTCACCCAGATGACAAACAGAGGAAAGAGCTGAGCCAAGAGCTTGGGCTGGAGCCTATGCAAATCAAGTTCTGGTTCCAAAACAAACGCACTCAAGTGAAGACTCAACATGAACGCCATGAGAACAATCTTCTGAAGTCTGAGAATGAAAAGCTTCGAGCAGATAACATTAGGTACAAGGAGTTACTAAGAAATGCTACATGCCCTACCTGTGGAGGCCCAGCTGCTGTTGGTGAAATGTCCTTTGACGAGCAGGAATTGAGGCTCGAAAATGCGCGATTAAGAGAAGAAATCGATAGGGTTTCTGCAATTGCGACCAAGTTTTCTCCAAAATCCCCGGGTTCTTACTATAACATGCCTTCGCGCTCGCTTGATCTGGGAGTTGGTGGTAACTATGGAGCACAGCCAGGCATGGTGGGAGAAATGTATGATGGCAATGACCCTTTTAGGGCATTTCCACTTCCTACTGATGCTGACAAACTCATGATTGTTGAGCTTGCTCTCATGGCTATGGATGAAGTTACAAGGTTGGCTCTGTCTGCAGAACCTTTATGGGTCGCTGGAAGCTACGGCACTGAGATTCTTAATGAAGAAGAATACCAGAGGACTTTCCCTAGGGCAATAGGTCAAAATTTGGGCTTCAAAACCGAAGCTTCAAGGCAATCCGCGGTTGTCATCATGAGTCATGCTAGAATAGTTGAGATGCTTATGGATGTGGATCAATGGGCAAACGTGTTTTGCGGCATCGTTACAAGAGCAGTGACACTCGAAGTTCTGTCAACTGGAATTGCCGGAAGTTACAATGGAGCCTTGCAAGTGATGGCAGCTGAGTTCCAGGTCCCTACACCTCTTGTTCCTACCCGCGAACACTATTTCGTGAGGTACTGTAAGAAGCACTCGGATGAATCATGGGTTGTTGTGGATTTATCATTGGATCATCTGCGACCTGGTGCTGTCAGAGGATGCCAAAGGCGACCTTCTGGTTGCATAATTCAAGAATTGCCAAATGGATATTCTAAGGTTATCTGGGTTGAACATGTTGAAGTAGATGGTAGAGAAGTGCATGACCTTTACAAACACTTTGTTAATTCTTGCCTTGCCTTTGGAGCTACTCGGTGGGTGGCATCATTAGATAGGCAATGCGAACGTTTTGCTAGTGTAAACGCCACCAACATACCAGCAGGGGATCTTTGTGGAAGGAAAAGTATGCTGAATCTAGCTGAAAGGATGATGTTGAGCTTTTGTAATGGTGTTGGCGCTTCTACCGCACATGTTTGGACACCACTAACAATTGGTGGTGAAGATTTGAGGGTCATGACCCGAAAGAGTGTGAATGATCCTGGCAGGCCTCCCGGTATTGTGCTCAGTGCTGCAACTTCTTTGTGGCTCCCAGTCCCTCCAACGAGGGTTTTTCATTTTCTTCGAGATGAAAAAGCGAGAAATCGGTGGGACATTCTCTCGAATGGGGCTATTGTTGAAGAAGTAGCACACATAGGAAATGGTCGTGATCCTGGAAACTCTGTCTCTTTACTTCGTGTGAATAGTTCGAATACCACCCAAAGCAACATGATCATACTTCAAGAGTGTTGGAGTGATGCTGCAGGATCATATGTAGTGTATGCTCCTGTTGATATAGTTGCCATGAATCTTGTGCTGGGTGGTGGCAATCCAGATTATGTTGCCCTGCTCCCTTCGGGCTTTGCTGTTCTCCCTGATGGGTCTGGAATGAAAAACGGGCCAGGGCCCATAATTGAGACTGGGTCTGGAGGCTGTCTTCTGACAGTTGCATTTCAGATATTGGTTGATTCGGCTCCAACTGCAAAACTGTCTATTGGTTCGGTCACCACTGTTAGCAATTTGATTAAGTGCACTGTTGATCGAATCACTGCTGCAGTGACGGGTGCCGCAGCACCTAATTAG 2151 0.4626 MYHSQNAFNPQQGLLNMTSSENDPLGRNRDDISNDIDTMEAPPSGDDQDLDQAARRKRYHRHTQHQIQEMESFFKECPHPDDKQRKELSQELGLEPMQIKFWFQNKRTQVKTQHERHENNLLKSENEKLRADNIRYKELLRNATCPTCGGPAAVGEMSFDEQELRLENARLREEIDRVSAIATKFSPKSPGSYYNMPSRSLDLGVGGNYGAQPGMVGEMYDGNDPFRAFPLPTDADKLMIVELALMAMDEVTRLALSAEPLWVAGSYGTEILNEEEYQRTFPRAIGQNLGFKTEASRQSAVVIMSHARIVEMLMDVDQWANVFCGIVTRAVTLEVLSTGIAGSYNGALQVMAAEFQVPTPLVPTREHYFVRYCKKHSDESWVVVDLSLDHLRPGAVRGCQRRPSGCIIQELPNGYSKVIWVEHVEVDGREVHDLYKHFVNSCLAFGATRWVASLDRQCERFASVNATNIPAGDLCGRKSMLNLAERMMLSFCNGVGASTAHVWTPLTIGGEDLRVMTRKSVNDPGRPPGIVLSAATSLWLPVPPTRVFHFLRDEKARNRWDILSNGAIVEEVAHIGNGRDPGNSVSLLRVNSSNTTQSNMIILQECWSDAAGSYVVYAPVDIVAMNLVLGGGNPDYVALLPSGFAVLPDGSGMKNGPGPIIETGSGGCLLTVAFQILVDSAPTAKLSIGSVTTVSNLIKCTVDRITAAVTGAAAPN 716
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca02g02421 716 SUPERFAMILY Bet v1-like 477 704 - -
Cca02g02421 716 SMART START_1 242 460 IPR002913 GO:0008289
Cca02g02421 716 SUPERFAMILY Homeodomain-like 41 113 IPR009057 -
Cca02g02421 716 CDD START_ArGLABRA2_like 237 459 - -
Cca02g02421 716 Gene3D - 44 129 - -
Cca02g02421 716 ProSiteProfiles 'Homeobox' domain profile. 53 113 IPR001356 GO:0003677
Cca02g02421 716 Coils Coil 107 142 - -
Cca02g02421 716 Pfam START domain 243 460 IPR002913 GO:0008289
Cca02g02421 716 Gene3D - 284 461 IPR023393 -
Cca02g02421 716 Pfam Homeodomain 56 111 IPR001356 GO:0003677
Cca02g02421 716 MobiDBLite consensus disorder prediction 1 23 - -
Cca02g02421 716 SMART HOX_1 54 117 IPR001356 GO:0003677
Cca02g02421 716 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 33 711 IPR042160 -
Cca02g02421 716 ProSitePatterns 'Homeobox' domain signature. 88 111 IPR017970 GO:0000981|GO:0006355
Cca02g02421 716 SUPERFAMILY Bet v1-like 233 462 - -
Cca02g02421 716 ProSiteProfiles START domain profile. 233 463 IPR002913 GO:0008289
Cca02g02421 716 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 33 711 - -
Cca02g02421 716 MobiDBLite consensus disorder prediction 1 64 - -
Cca02g02421 716 Coils Coil 161 181 - -
Cca02g02421 716 CDD homeodomain 55 114 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca02g02421 Cca-Chr2 45270041 45276070 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca02g02421 1 709 Homeobox Transcription Factor Family AT4G21750 64.116 0.0 962
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Cca02g02421 START 1.1e-51 CL0209
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca02g02421 K09338 - qsu:112016283 1000.73
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca06g02009 06 35336137 35345804 Cca02g02421 02 45270041 45276070 PCT