Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca02g02420 ATGTTCTCCCAAAACCTGATTCTGCCCCCCGAAAACCCTAGACCCGCGGCGTTCGCTTCCAAACCCATGAGCAATGAGATCGCAATCGCCGCGCAGAAGCCTCCTCCGTCGATTCTCGTTGGCCGCTTCAAGGCTCTCCTCAAGCAGCGCGACGACGAGCTCCGCCTCTCCACCGGCGTCCCCGTGCCGCCGCCCACCACCGACGAAATCGTCCAGATTTACGAGCTGCTCCTCTCCGAACTCACCTGCAATTTGAAACCTATCATCACCGATCTCACCATCATTGCCGAGCAGCAGAGGGAGCACGCCAAGGGCATCGCTGACGCAATTTGCGCTCGGATTCTCGAGGTGCCAGCAGATCAAAAGCTTCCTTCACTCTATCTGTTAGACAGTATTGTAAAGAATTTTGGGCAGGAATACATTAGATACTTCTCTCTACGTCTGCCAGAAGTTTTCTGTGAGGCATACAGGCAGGTTCAGTCTAGTTTGCATCCTGCTATGCGCCATCTTTTTGGTACCTGGTCAAAAGTCTTTCCACCTGCTGTTCTACGCAAGATTGAAGCTGAGTTGCAATTTTCTCAATCATCCACCCTGAATTCTGTCAGGGCTTCTGAATCTCCTCGACCAAGTCATGGCATACATGTTAATCCGAAATACTTACGGCAGTTAGAGCGGTCGACTGTGGATAGTGTTGGTGGTGAAAAGTTGGATTCATCAGGAAATGCTAGTAATTTTGGCTTTGTAGCAAGTAAGACACAACAATTTTTATCTAGCAGTAGCAGGCTTGGAATATCCTCGTCCCCTTCAAGAATTGGACTTGATAGGCCTTTGTCTGCATCTATGGATGAATATGCAGTTGAGAATTCTGCTGGCAGGTTAATTGAGAGAGAGTCTCCTCATCCTGCCATTGATTATGGAGTAGCCAAAGCATTAGGTAGAGATGTGGAGTTGAGTGACTGGCAGCGAAAGCAGTATTCTGGTGATGGTCGTAATCGATTTCCAACTTCTATTTCATACAGCCTTAGTAATGGACACCAGCGTCAAAGTCCAAGAGCTTTAATTGATGCGTATGGTAGTGACAAAAGCCAAGAAACTTCAAGCAGTAAGCCTTCGGTAGTTGAACGTCTGGATAGAAATGGTATAGACAACAAGGTGTTGTCAACCTCATGGCAGAATACTGAAGAGGAGGAGTTTGATTGGGAAGATATGAGTCCAACATTAATGGACCATAGTAGGAATAACAGCTTATTGTCTTCAACTATTGGTTTCCCCAGGGAAAGGCCTGTCAGTGTAGCTAATACAACTTTGTCTGAGCAAGATACCAGGAAGAGTTGGTCTAGTGGATCTCAGCTTCCTCCACTAGATGATTCTTCTGCTGTAGCAGAAGATGCATTTGCCTCTTCGGCTTTTCGCCGTGCACCCCTGGGTCATGTACCTGGATTCCAAAATCAAATCAACCATAATTTGGTCTCCTCTCAACCTCATGATGCTTGGAAGATTTCTCATCATCCGTCTAACTCGTCGCAACATATCTTTAGTAATAGGGGGCAAGCAAGGAGTCTTACGAGCCCTCCTATTGATAACATTCGGAATACAGATGTGAACTCCTATCGGATTCGACCTGCAGTGTCAAGGATGGTTTCTGGCCTTGTCTCTAATGTGGAAACCCGCCCATCGGTTTTGCCAGTGTCTTTTGATATAAGGCCTGCTGTAAATCTGAATGTCACTCGACCTCCTACTTTAAATCCAATATCTCCGTTGCAAAAACGTGTTAGGGGTCAGTTTGAAGCAATACATACTAGTAATGCTATTGTGCACCACGTTGTAAATAAATCTTCGTTTATGCCAGAACATTCATTTGATAGTGTTGAAAGCAAGGATTCTAGTATTTCAAAGATACATCAGTTGCCTAATCAGCTTCCTGGACTACTTTCGGCCAACCAGAAAAATCATGGGCAAGCACCACAACAGTTTTTTCCATCTCAGGATCCATCAACCTCACAATTTAATCATGGGAGTTCTTTGCAGGGGCATGGTGCTTCTATAAGTTCAGCCATATCAAATCCGTTACCTGTTATGCACTTCCCTTTACCAGTCCAAAGTATTGCAAACAACCCTTTACATTTACAGGGTGGAGCCCACCCACCTTTGCCTCCAGGTCGCCCTCCTGCTCCATCCCAAATGATTCCTCATTCAAATGCTAGTCCATTTATGGCAAGCCAACAGCCAGCTGTTGGATATACTAATTTAATTAGTTCTCTAATGTCTCAAGGCGTGATTTCATTGGCTAGCCAGCTGCCTGCACAGGATCCTGTTGGAACCGAGTTTAATCCAGATATTCTGAAGGTTCGTCATGAGTCTGCAGTAAATGCCTTATATGGTGATCTCCCTAGACAATGCACAACTTGTGGGCTCCGATTCAGATGCCAAGAGGAACACAGTAGTCATATGGATTGGCATGTGACCAAGAATCGGATGTCTAAAAGCCGTAAGCAGAAACCCTCTCGAAAGTGGTTTGTGAGTGACAGGATGTGGCTTAGTGGTGCAGAGGCATTGGGAACAGAATCAGTTCCAGGTTTTTTGCCAGCAGAAACCGTAGAAGAAAGGAAAGATGACGAAGAGTTGGCAGTGCCGGCAGAAGAGGACCAGAATACATGTGCATTATGCGGAGAGCCTTTCGATGAGTTTTACAGTGATGAAATGGAGGAATGGATGTATAGAGGAGCTGTATACCTCTATGCACCCACGGGAACAACAGCAGGCATGGACAGGTCACAGTTGGGCCCCATTATTCATGCTAAATGCAGATCAGAATCTAATATGGGCGCCTCTGAAGATCTTGGACTAGATGAAAAGGGTGCCGATGAAGAGGGTATCCAAAGGAAACGAATGCGGAGTTGA 2901 0.4598 MFSQNLILPPENPRPAAFASKPMSNEIAIAAQKPPPSILVGRFKALLKQRDDELRLSTGVPVPPPTTDEIVQIYELLLSELTCNLKPIITDLTIIAEQQREHAKGIADAICARILEVPADQKLPSLYLLDSIVKNFGQEYIRYFSLRLPEVFCEAYRQVQSSLHPAMRHLFGTWSKVFPPAVLRKIEAELQFSQSSTLNSVRASESPRPSHGIHVNPKYLRQLERSTVDSVGGEKLDSSGNASNFGFVASKTQQFLSSSSRLGISSSPSRIGLDRPLSASMDEYAVENSAGRLIERESPHPAIDYGVAKALGRDVELSDWQRKQYSGDGRNRFPTSISYSLSNGHQRQSPRALIDAYGSDKSQETSSSKPSVVERLDRNGIDNKVLSTSWQNTEEEEFDWEDMSPTLMDHSRNNSLLSSTIGFPRERPVSVANTTLSEQDTRKSWSSGSQLPPLDDSSAVAEDAFASSAFRRAPLGHVPGFQNQINHNLVSSQPHDAWKISHHPSNSSQHIFSNRGQARSLTSPPIDNIRNTDVNSYRIRPAVSRMVSGLVSNVETRPSVLPVSFDIRPAVNLNVTRPPTLNPISPLQKRVRGQFEAIHTSNAIVHHVVNKSSFMPEHSFDSVESKDSSISKIHQLPNQLPGLLSANQKNHGQAPQQFFPSQDPSTSQFNHGSSLQGHGASISSAISNPLPVMHFPLPVQSIANNPLHLQGGAHPPLPPGRPPAPSQMIPHSNASPFMASQQPAVGYTNLISSLMSQGVISLASQLPAQDPVGTEFNPDILKVRHESAVNALYGDLPRQCTTCGLRFRCQEEHSSHMDWHVTKNRMSKSRKQKPSRKWFVSDRMWLSGAEALGTESVPGFLPAETVEERKDDEELAVPAEEDQNTCALCGEPFDEFYSDEMEEWMYRGAVYLYAPTGTTAGMDRSQLGPIIHAKCRSESNMGASEDLGLDEKGADEEGIQRKRMRS 966
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca02g02420 966 CDD CID_Pcf11 74 190 - -
Cca02g02420 966 Gene3D - 64 191 IPR008942 -
Cca02g02420 966 MobiDBLite consensus disorder prediction 939 966 - -
Cca02g02420 966 MobiDBLite consensus disorder prediction 645 682 - -
Cca02g02420 966 PANTHER PRE-MRNA CLEAVAGE COMPLEX II 35 941 IPR045154 GO:0000993|GO:0003729|GO:0006369|GO:0006378|GO:0006379
Cca02g02420 966 MobiDBLite consensus disorder prediction 359 373 - -
Cca02g02420 966 SUPERFAMILY ENTH/VHS domain 66 190 IPR008942 -
Cca02g02420 966 PANTHER POLYADENYLATION AND CLEAVAGE FACTOR HOMOLOG 4 35 941 - -
Cca02g02420 966 ProSitePatterns Zinc finger C2H2 type domain signature. 800 820 IPR013087 -
Cca02g02420 966 MobiDBLite consensus disorder prediction 502 529 - -
Cca02g02420 966 SMART 558neu5 69 191 IPR006569 -
Cca02g02420 966 MobiDBLite consensus disorder prediction 325 376 - -
Cca02g02420 966 MobiDBLite consensus disorder prediction 434 457 - -
Cca02g02420 966 MobiDBLite consensus disorder prediction 328 349 - -
Cca02g02420 966 MobiDBLite consensus disorder prediction 434 454 - -
Cca02g02420 966 ProSiteProfiles CID domain profile. 66 194 IPR006569 -
Cca02g02420 966 Pfam CID domain 85 185 IPR006569 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca02g02420 Cca-Chr2 45245057 45256196 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca02g02420 739 966 C2H2 Transcription Factor Family AT4G04885 68.122 9.41e-102 335
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca02g02420 K14400 - gmx:100794796 1589.7