Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca02g02419 ATGGAGAGGAAAGGAAAGGGGTGGGGTTTGAATCGGACGGTCCAGTGCAGCTGCAGCACCCCGCACTGTTTCTTCGACCTTGTGACTATGGTGAGGGTTAGTGTCTTGAATGATGCTCTCAAGAGCATGTACAATGCTGAGAAACGGGGGAAGCGCCAGGTCATGATTAGGCCATCCTCGAAAGTGATTATAAAATTCCTTTTGGTGATGCAGAAGCATGGATACATAGGGGAGTTCGAATATGTTGATGATCACAGGGCTGGCAAAATTGTGGTAGAATTGAATGGCAGATTGAACAAGTGTGGTGTTATTAGTCCCCGCTTTGATGTTGGTGTCAAAGAGATAGAAGGTTGGACTGCAAGGCTACTTCCCTCAAGACAGTTTGGGTACATTGTCTTGACTACCTCTGCTGGTATCATGGATCATGAAGAAGCCAGGAGAAAGAATGTCGGGGGCAAAGGAGAAGCGGAAGCATGTCCCAAGCAAAGAGTGAGCTTCGTCGGAGAAGCCAACTTCTACCTGCGTTATAACTACTTAGCACGAAGTGAACATCGTTTGACAGCATTATAG 570 0.4702 MERKGKGWGLNRTVQCSCSTPHCFFDLVTMVRVSVLNDALKSMYNAEKRGKRQVMIRPSSKVIIKFLLVMQKHGYIGEFEYVDDHRAGKIVVELNGRLNKCGVISPRFDVGVKEIEGWTARLLPSRQFGYIVLTTSAGIMDHEEARRKNVGGKGEAEACPKQRVSFVGEANFYLRYNYLARSEHRLTAL 189
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca02g02419 189 Pfam Ribosomal protein S8 36 153 IPR000630 GO:0003735|GO:0005840|GO:0006412
Cca02g02419 189 SUPERFAMILY Ribosomal protein S8 33 153 IPR035987 GO:0003735|GO:0005840|GO:0006412
Cca02g02419 189 PANTHER 40S RIBOSOMAL PROTEIN S15A 30 154 IPR000630 GO:0003735|GO:0005840|GO:0006412
Cca02g02419 189 ProSitePatterns Ribosomal protein S8 signature. 129 146 IPR000630 GO:0003735|GO:0005840|GO:0006412
Cca02g02419 189 PANTHER BNAA02G06730D PROTEIN 30 154 - -
Cca02g02419 189 Gene3D - 99 154 - -
Cca02g02419 189 Gene3D - 30 98 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca02g02419 Cca-Chr2 45235856 45245230 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca02g02419 30 153 Cytoplasmic Ribosomal Protein Gene Family AT5G59850 97.581 1.22e-87 251
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca02g02419 K02957 - han:110936430 248.825