Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca02g02411 ATGAATGAGGAGAAAGAGAAGGTGAATGAGCACCACGCCAAGACCCTCATCTGTGCCCTCAACCTTCTCTCGCGCGACCTCCCTCTCCCCCCTCACATCCTCAACTCCGTCTCCTCCATCTACCGCCTACATGCTGATGGAGAGGATTCTGGAGAGGATTTAGTAACGGATCTTGAAGATGCACTGTCCACGCAGCCTCGGAATTGTGTGTCAGGTTTGAAATTGGAGGAAGCAAGGAAGAGTCGTTACCGAAGTCAGATTCAGCATCGGTTGAATGAGCTTGAAGAATTGCCTTCAAGCAGGGGAGAGGACCTGCAGACAAAGTGCTTGCTTGAACTTTATGGACTAAAGTTGGCAGAGTTGCAGTTGAAGGTTCGGTCTGATATAAGTTCTGAATACTGGCTCAATACTAAGTGTGCATATCCTGACAGGCAATTGTTTGATTGGGGCATGATGAGGTTGCGTCGTCCATTATATGGTGTTGGAGATCCATTTTCCATGGATGCTGATGATCAATTGAGGAAGAAACGGGAGGCTGAGAGACTGTCAAGATTAGAAGAAAAAGAGAAAAATCAAATAGAGACTAGAACTCGAAAGTTTTTTGCAGAAATACTCAATACTGTACGTGAGTTCCAATTGCAAATTCAAGCTTCTTTGAAGCGGAGAAAACAAAGGAATGATGGTGTCCAGGCGTGGCATGGAAGGCAAAGACAACGGGCAACTCGTGCAGAGAAATTGAGATTCCAAGCTTTGAAGGCTGATGATCAAGAAGCCTACATGAGAATGGTTAAAGAGAGTAAGAATGAGAGATTAACTTTGCTCCTTGAAGAAACAAATAAACTACTAGTAAATTTAGGAGCAGCTGTTCAACGTCAAAAGGACTCCAAATATTCAGATGGTATTGAACCCTTGGAGGATTCTGAAGCTGATTTACCCGAGTCAGATGCTTCAAAGAATGGAGTTTCTAAGGAATCACCTCTTGATGAAGATGTAGATCTGATAGATTCCGATCATAATGGTGATTCTAGTGATTTACTTGAAGGTCAGCGACAATACAACTCTGCCATACATTCAATTCAAGAAAAGGTTACTGAGCAACCATCTATACTTCAAGGTGGAGAATTAAGGCCATACCAAATAGAGGGGCTCCAATGGATGCTTTCTTTGTTTAATAACAACTTAAATGGAATTTTGGCTGATGAAATGGGGCTTGGGAAGACAATACAAACAATTTCTCTGATAGCATATCTAATAGAATATAAGGGTGTGACTGGTCCCCACTTGATTGTTGCTCCAAAGGCTGTTCTGCCAAATTGGATCAATGAATTCACAACATGGGTTCCTAGCATCACAACTATTCTTTATGATGGAAGGCTGGATGAGAGGAAAGCAATGAAGGAAGAGTTGTCAGGGGAGGGGAAATTTAATGTTTTGATAACACACTATGATCTTATAATGAGAGATAAAGCATTTCTCAAGAAAATTCAATGGTACTACTTGATTGTGGATGAAGGGCATCGGTTGAAGAATCATGAATCTGCTCTAGCAAGAACCTTGGACAATGGCTATCACATCAAACGAAGACTTCTATTGACCGGTACCCCAATTCAGAACAGTTTGCAGGAGTTGTGGTCTTTGCTTAATTTTCTCCTACCAAACATTTTTAACTCAGTTCAGAATTTCGAGGACTGGTTTAATGCCCCCTTTGCAGACCGAGTTGATGTCTCTCTCACAGATGAGGAACAACTGTTGATCATCCGGCGTCTGCATCAAGTAATAAGGCCCTTCATATTGCGAAGGAAAAAGGATGAGGTGGAAAAATTTCTTCCTGGGAAATCTCAGGTCATACTCAAATGTGATATGTCAGCCTGGCAGAAAGTATATTATCAACAAGTTACTGACGTTGGCAGAGTTGGTTTGGACAATGGTTCTGGAAAATCAAAAAGTCTACAAAACTTAACAATGCAACTTAGAAAGTGTTGTAACCATCCCTACCTCTTCGTGGGAGATTATGATATGTATAAACATAAGGAGGAGATTGTCAGAGCATCAGGAAAATTTGAACTTCTTGACCGTTTGCTCCCAAAACTTCGCAGATCTGGTCACAGAGTCCTCCTTTTCTCACAAATGACTCGACTCATGGACGTTCTTGAAATCTATTTGCGACTTCATGATTTTAAGTATCTTAGACTTGATGGCTCAACAAAAACTGAGGAAAGAGGCAATCTTCTACGGAAATTTAATGCTCCTGACTCTCCATACTTTATGTTTCTTTTGAGCACCCGTGCTGGAGGTCTTGGTTTGAACTTACAAACAGCAGATACTGTTATAATCTTTGATAGCGATTGGAATCCGCAAATGGATCAACAAGCTGAGGATCGTGCCCATCGCATTGGACAAAAAAAGGAAGTCAGGGTTTTTGTGTTGGTTAGCGTAGGATCAATTGAAGAGGTGATTTTAGAGCGTGCAAAACAAAAGATGGGCATTGATGCCAAAGTCATCCAGGCAGGACTATTCAATACAACTTCAACAGCCCAGGACAGAAGAGAAATGTTAGAAGAGATTATGCGTAGAGGTACAAGCTCACTTGGAACAGATGTGCCTAGTGAGAGAGAAATTAACCGCCTTGCTGCTCGATCAGATGAGGAATTTTGGCTGTTTGAGAAAATGGATGAAGAAAGAAGACAAAAGGAAAATTACAGATCTCGTCTCATGGAAGAGCATGAATTGCCAGATTGGGTGTATTCTCCAATTAACAAGGATGATAAGGCCAAAGATTTCAACAGTGCTGTTACTGGAAAGCGGAAAAGAAAAGAAGTGGTATATGCAGATACATTAAGTGATCTGCAATGGATGAAGGCTGTGGAGAATGGAGAAGACATATCAAAGTTTTCCGGAAAAGGAAAAAGAAGAGACCACCTCTCATCTGACAGCGTTGCACAAGCCAGCGATAATACAGAAGGGGCAGAAGATTCTTTAGAGTTGAGGACTGAAAGTGTTCCCATGGCAAATGAGAGAACAAGTGAAGATAGTTTCCATGCGACTCCTTCCTCAAAGAGATTCAAGTCTGAAGGAACAAACTTCCTGAAACATACATACGAGGATGTTGGAAGTGGTTTGAACCACCATTTGTTATCATGGAATACTCACAAAAAGAAGAGATCAAGCTACCTTGGCCAGAGTTCATTATCTGATACTAGAGGGCATTCTTCAAATGGAAGAGCAAACTGGAACTGA 3237 0.4152 MNEEKEKVNEHHAKTLICALNLLSRDLPLPPHILNSVSSIYRLHADGEDSGEDLVTDLEDALSTQPRNCVSGLKLEEARKSRYRSQIQHRLNELEELPSSRGEDLQTKCLLELYGLKLAELQLKVRSDISSEYWLNTKCAYPDRQLFDWGMMRLRRPLYGVGDPFSMDADDQLRKKREAERLSRLEEKEKNQIETRTRKFFAEILNTVREFQLQIQASLKRRKQRNDGVQAWHGRQRQRATRAEKLRFQALKADDQEAYMRMVKESKNERLTLLLEETNKLLVNLGAAVQRQKDSKYSDGIEPLEDSEADLPESDASKNGVSKESPLDEDVDLIDSDHNGDSSDLLEGQRQYNSAIHSIQEKVTEQPSILQGGELRPYQIEGLQWMLSLFNNNLNGILADEMGLGKTIQTISLIAYLIEYKGVTGPHLIVAPKAVLPNWINEFTTWVPSITTILYDGRLDERKAMKEELSGEGKFNVLITHYDLIMRDKAFLKKIQWYYLIVDEGHRLKNHESALARTLDNGYHIKRRLLLTGTPIQNSLQELWSLLNFLLPNIFNSVQNFEDWFNAPFADRVDVSLTDEEQLLIIRRLHQVIRPFILRRKKDEVEKFLPGKSQVILKCDMSAWQKVYYQQVTDVGRVGLDNGSGKSKSLQNLTMQLRKCCNHPYLFVGDYDMYKHKEEIVRASGKFELLDRLLPKLRRSGHRVLLFSQMTRLMDVLEIYLRLHDFKYLRLDGSTKTEERGNLLRKFNAPDSPYFMFLLSTRAGGLGLNLQTADTVIIFDSDWNPQMDQQAEDRAHRIGQKKEVRVFVLVSVGSIEEVILERAKQKMGIDAKVIQAGLFNTTSTAQDRREMLEEIMRRGTSSLGTDVPSEREINRLAARSDEEFWLFEKMDEERRQKENYRSRLMEEHELPDWVYSPINKDDKAKDFNSAVTGKRKRKEVVYADTLSDLQWMKAVENGEDISKFSGKGKRRDHLSSDSVAQASDNTEGAEDSLELRTESVPMANERTSEDSFHATPSSKRFKSEGTNFLKHTYEDVGSGLNHHLLSWNTHKKKRSSYLGQSSLSDTRGHSSNGRANWN 1078
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca02g02411 1078 Coils Coil 175 196 - -
Cca02g02411 1078 SMART ultradead3 371 564 IPR014001 -
Cca02g02411 1078 Coils Coil 890 910 - -
Cca02g02411 1078 Pfam Helicase conserved C-terminal domain 686 799 IPR001650 -
Cca02g02411 1078 SMART helicmild6 715 799 IPR001650 -
Cca02g02411 1078 PANTHER ATP-DEPENDENT HELICASE BRM 59 1013 - -
Cca02g02411 1078 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 351 600 IPR027417 -
Cca02g02411 1078 SMART SnAC_2 892 952 IPR029295 GO:0042393
Cca02g02411 1078 Pfam SNF2-related domain 378 666 IPR000330 GO:0005524|GO:0140658
Cca02g02411 1078 MobiDBLite consensus disorder prediction 962 1022 - -
Cca02g02411 1078 Pfam Snf2-ATP coupling, chromatin remodelling complex 893 952 IPR029295 GO:0042393
Cca02g02411 1078 Gene3D - 344 599 IPR038718 -
Cca02g02411 1078 MobiDBLite consensus disorder prediction 294 346 - -
Cca02g02411 1078 CDD SF2_C_SNF 677 810 - -
Cca02g02411 1078 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 387 553 IPR014001 -
Cca02g02411 1078 Gene3D - 606 906 IPR027417 -
Cca02g02411 1078 MobiDBLite consensus disorder prediction 962 977 - -
Cca02g02411 1078 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 689 856 IPR001650 -
Cca02g02411 1078 PANTHER SNF2/RAD54 HELICASE FAMILY 59 1013 - -
Cca02g02411 1078 MobiDBLite consensus disorder prediction 322 344 - -
Cca02g02411 1078 MobiDBLite consensus disorder prediction 1055 1078 - -
Cca02g02411 1078 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 602 853 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca02g02411 Cca-Chr2 45137549 45147635 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca02g02411 682 827 RAD5 or RAD16-like Gene Family AT5G43530 38.000 1.46e-21 99.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Cca02g02411 SNF2_N 9.2e-68 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca02g02411 - - gmx:100786280 2003.02