Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca02g02403 ATGGAGTTTCAGAGGCGCCAAGATCAGAGCCTCTCCCAGCGCAAGGGCCAGAAGCGGAAGCTCGACGAGGAACACCACCACGAGCGGCAGATCTcgccgccgccgcccaccgccgtcgagcgcgcggcgctcctctccgacgtcgccgAACAGGTGAGCATCCTCGAGTCGACTTTCACGTGGAACGAAGCGGACCGATCCGCGGCCAAGCGCGCCACTCACGCGCTCGCCGATCTCGCGAAGAACGAGGAAGTGGTGAACGTGATTGTTGAAGGAGGTGCGATTCCGGCTTTAGTGAAGCATCTTCAGGCGCCGCCTCTTAGTGACCGCGTCCAGAAGCCATTGCCGTTCGAGCACGAGGTTGAGAAAGGGAGCGCTTTCGCACTAGGACTTCTCGCCGTCAAGCCAGAGCATCAACAGCTCATTGTTGACAGTGGCGCCTTAACACATCTTGTTGATCTTTTAAAGAGGCACAAGAATGGCTTAACTTCTCGTGCAATTAATAGTCTCATTAGAAGGGCTGCAGATGCTATTACTAATCTTGCTCATGAGAACAGCAGCATTAAAACCCGTGTCAGGATGGAAGGTGGAATTCCACCACTTGTTCATTTGCTTGATTTCGCTGATGCAAAGGTGCAAAGAGCAGCTGCTGGTGCTCTGCGAACCCTGGCTTTTAAAAATGATGAAAATAAAAATCAGATTGTTGATTGTGATGCTCTTCCAACTTTGATTTTAATGCTACGTTCTGAAGATGCTGCTGTTCATTATGAAGCGGTTGGTGTGATTGGAAATCTAGTCCACTCTTCACCTAATATAAAGAGAGAAGTTCTTCTTGCTGGAGCTTTACAGCCAGTTATTGGATTACTTAGTTCCTGCTGTTCTGAAAGCCAGAGAGAAGCAGCCTTGTTACTTGGACAATTTGCAGCAACTGATTCAGACTGCAAGGTTCACATTGTACAGAGAGGTGCTGTTCGACCTTTGATAGAGATGCTTCAGTCTCCTGATGTACAACTCAGGGAAATGTCTGCTTTTGCGTTGGGGAGATTGGCCCAGGACACACATAACCAGGCTGGTATTGCACACAATGGTGGCTTAGTGCCGTTGCTCAAGCTTCTTGACTCAAAAAATGGGTCTTTGCAACATAATGCTGCTTTTGCTCTTTATGGCCTTGCAGATAATGAGGATAATGTGTCCGATTTCATTAGGGTAGGTGGAGTTCAGAGACTGCAGGATGGAGAATTTATTGTTCAAGCAACTAAAGACTGTGTTGCCAAGACGTTGAAAAGATTAGAGGAGAAGATCCATGACCGCGTGCTGAACCATTTGTTATATCTTATGCGAGTTTCAGAAAAGGGTTGTCAAAGACGAGTTGCTTTGGCTCTTGCACATCTTTGTTCTGCAGATGATCAGAGACAAATTTTTATTGATCACTATGGTCTTGAGTTGCTTCTTGGGCTTCTTGGCTCATCTAGCTCTAAGCAGCAACTTGATGGTGCTGTGGCTTTATGCAAGTTGGCCAATAAAGCCTCAACCCTGTCTCCTGTGGATGCTGCTCCTCCTTCTCCAACACCACAGGTCTATTTAGGAGAGCAGTATGTAAACAATGCCACATTGTCTGATGTTACCTTTTTGGTTGAAGGCAAACGATTTTATGCTCATAGGATTTGTCTACTTGCATCTTCAGATGCATTTCGTGCAATGTTTGATGGTGGTTACAGGGAGAAGGAGGCAAGAGACATAGAGATTCCAAATATTAGATGGGAGGTTTTTGAGTTGATGATGAGATTTGTATATTGTGGATCAGTTGATGTCACTCTGGATATTGCTCAGGATCTTCTTCGAGCAGCTGATCAATATCTTTTGGAAGGACTTAAGAGACTCTGTGAGTACACAATTGCACAGGATATATCGTTAGAGAATGTGTCAAGTATGTATGAACTTTCAGAAGCCTTCAATGCAATATCATTGAAGCATGCATGCATCCTTTTTATCTTGGAGCAATTTGATAAATTGAGTGCAAGGCCAGGGCACTCTCTTCTGATTCAGCGAATAATACCAGAGATCCGCAATTACTTTGTTCAAACTCTGTAA 2091 0.4376 MEFQRRQDQSLSQRKGQKRKLDEEHHHERQISPPPPTAVERAALLSDVAEQVSILESTFTWNEADRSAAKRATHALADLAKNEEVVNVIVEGGAIPALVKHLQAPPLSDRVQKPLPFEHEVEKGSAFALGLLAVKPEHQQLIVDSGALTHLVDLLKRHKNGLTSRAINSLIRRAADAITNLAHENSSIKTRVRMEGGIPPLVHLLDFADAKVQRAAAGALRTLAFKNDENKNQIVDCDALPTLILMLRSEDAAVHYEAVGVIGNLVHSSPNIKREVLLAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQDTHNQAGIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLADNEDNVSDFIRVGGVQRLQDGEFIVQATKDCVAKTLKRLEEKIHDRVLNHLLYLMRVSEKGCQRRVALALAHLCSADDQRQIFIDHYGLELLLGLLGSSSSKQQLDGAVALCKLANKASTLSPVDAAPPSPTPQVYLGEQYVNNATLSDVTFLVEGKRFYAHRICLLASSDAFRAMFDGGYREKEARDIEIPNIRWEVFELMMRFVYCGSVDVTLDIAQDLLRAADQYLLEGLKRLCEYTIAQDISLENVSSMYELSEAFNAISLKHACILFILEQFDKLSARPGHSLLIQRIIPEIRNYFVQTL 696
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca02g02403 696 Pfam Armadillo/beta-catenin-like repeat 227 266 IPR000225 GO:0005515
Cca02g02403 696 Pfam Armadillo/beta-catenin-like repeat 311 350 IPR000225 GO:0005515
Cca02g02403 696 Pfam Armadillo/beta-catenin-like repeat 192 224 IPR000225 GO:0005515
Cca02g02403 696 Pfam BTB/POZ domain 532 634 IPR000210 GO:0005515
Cca02g02403 696 Gene3D Potassium Channel Kv1.1; Chain A 519 665 IPR011333 -
Cca02g02403 696 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 196 231 IPR000225 GO:0005515
Cca02g02403 696 PANTHER ARM REPEAT PROTEIN INTERACTING WITH ABF2 6 696 IPR044282 -
Cca02g02403 696 MobiDBLite consensus disorder prediction 1 37 - -
Cca02g02403 696 SUPERFAMILY ARM repeat 60 410 IPR016024 -
Cca02g02403 696 SUPERFAMILY POZ domain 531 633 IPR011333 -
Cca02g02403 696 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 93 147 IPR000225 GO:0005515
Cca02g02403 696 SMART BTB_4 539 636 IPR000210 GO:0005515
Cca02g02403 696 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 238 280 IPR000225 GO:0005515
Cca02g02403 696 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 363 405 IPR000225 GO:0005515
Cca02g02403 696 PANTHER ARM REPEAT PROTEIN INTERACTING WITH ABF2 6 696 - -
Cca02g02403 696 SUPERFAMILY ARM repeat 436 612 IPR016024 -
Cca02g02403 696 MobiDBLite consensus disorder prediction 1 31 - -
Cca02g02403 696 ProSiteProfiles BTB domain profile. 539 606 IPR000210 GO:0005515
Cca02g02403 696 Gene3D - 274 517 IPR011989 -
Cca02g02403 696 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 146 196 IPR000225 GO:0005515
Cca02g02403 696 CDD BTB_POZ_ARIA_plant 526 641 - -
Cca02g02403 696 Gene3D - 167 273 IPR011989 -
Cca02g02403 696 Gene3D - 37 166 IPR011989 -
Cca02g02403 696 SMART arm_5 227 267 IPR000225 GO:0005515
Cca02g02403 696 SMART arm_5 82 134 IPR000225 GO:0005515
Cca02g02403 696 SMART arm_5 311 351 IPR000225 GO:0005515
Cca02g02403 696 SMART arm_5 352 392 IPR000225 GO:0005515
Cca02g02403 696 SMART arm_5 185 225 IPR000225 GO:0005515
Cca02g02403 696 SMART arm_5 269 309 IPR000225 GO:0005515
Cca02g02403 696 SMART arm_5 467 507 IPR000225 GO:0005515
Cca02g02403 696 SMART arm_5 135 183 IPR000225 GO:0005515
Cca02g02403 696 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 322 364 IPR000225 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca02g02403 Cca-Chr2 45073161 45081148 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca02g02403 295 409 U-box Gene Family AT3G46510 29.915 3.49e-06 48.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR TRAF Cca02g02403 BTB 7e-25 CL0033
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca02g02403 - - gmx:100784348 1281.54
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca06g01997 06 35162010 35169596 Cca02g02403 02 45073161 45081148 PCT