Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca02g02385 ATGGGGTTTCAACAAAATAAGAATCCTGAAGATCTTGAGAGGTTATACAGTGAAATTCATCTGCTCAAGACATTGAAACACAAGAACATCATGAAGTTCTATACTTCATGGGTTGATACGGCCAACAGGCACATTAACTTTGTCACCGAGATGTTTACCTCTGGAACTCTAAGACAGTACAGACTTAAACACAGAAGGGTTAACATCAGAGCTATTAAGCATTGGTGCAGGCAGATTTTGGAAGGACTTCTCTATCTGCACAGCTATGATCCTCCTGTGATTCATAGAGATCTCAAGTGTGATAATATTTTCATCAATGGCAACCAAGGGGAGGTCAAAATTGGTGATCTTGGCCTTGCTGCAATTCTCCGCAAATCTAATGCTGCTCGCTGCGTTGGCACACCTGAGTTTATGGCTCCTGAAGTGTATGAAGAGGATTACAATGAGTTGGTCGACATATACTCTTTTGGAATGTGCATCTTAGAGATGGTGACTTTTGAATATCCTTATAGTGAATGCAACCATCCTGCTCAAATTTACAAGAAAGTTGTCTCTGGTAAGAAGCCAGAAGCTCTTTACAAAGTAAACAATCCCGAGGTTAGACAATTTGTAGAGAAATGCCTAGCAACTGCGTCCCTCAGACTTTCAGCTAAGGAACTCTTGGAGGACCCGTTTCTCCAAATTGATGATTATGGGTCTGACTCAAAAGTAGTTCAGTATCAAAGAGATTGCTATCAAGTAACCCCATTAATTAGACAACCTTTGAATGGAATTTATAGCATTAACGATACCTTAATGAGTGGGTACACTGATAATCTTGGTGGTTATGGACCTGTATCTGAATTGGATTATCCTCAAGATGATTTTGAGCCGAGTGAAATTGGTCTCTTTGAATGCGAAGAGGGTGACAATTTGGCTGAAGTTGACACCACAATCAAAGGTAGTAGAAGAGAAGATGATGGCATCTTTTTGAGAATCAGAATAGCAGATAAGGAAGGTCGAGTTCGAAATATCTACTTCCCATTTGACATCGAGACTGATACTGCATTGAGTGTTGCAAATGAAATGGTAGCTGAGCTTGACATAACTGACCAAGATGTAACTAAATTAGCAAATATGATAGACAATGAAATTGCAACCTTGGTTCCAGAGTGGAAAGCAGAACAGATAATAGAGGAAAATTCAGAATGTTCAAGTGCAAATGTCTGCCGCAATTGTGCTGCAAACGGTTCCTTGTTTGACTATGTATCATCAAATAATCCATGTGGCAAGAACCTTCAATTTCTTCGTTGTTCTAAAAATGGATGTGCTGCAGTTCATGGGCGATTTGAAGAGATAACATACCAAGTTGAAGGATCTGAAAATAGTGCTACAGAAGGTGAGCCAGATGCATCAAGGCAATCTAAAGGCATTCATTATACAGATATCTGGGCACAGAGAGATGATCCAGAGTTATGCCATGAAGAATTAAAAGACATTCACTGTGACCAAGCTCACGAGGCATCACACCCATCAAACATCAAGGAGGATGGAAAAACTGTTAATATGGATGAACAAAGTGATCTCAATACCAAAAGGCCTCTTTCAAACCCTGCAACAAATTGTGCTCCCTTGGACTATGAAAATGAAATTAGGCAAGAACTAAGATGGCTCAAAGCAAAGTACCAAATGCAGTTAAGGGAGCTTAGAGACCACCAACTAGGGGGTAAACCAAAATTTTCTAGCATATCTCCTGACACTGAAAAATTAGAGCATGGGATTGGAAAAGATGGAATTCTGAGGCTTTCGGCTACATCCAACTTGAAGATACAAAACAATAAACCACTATTGAGATCTATATTTTCTGGGAAGCATTTTCATGTTGATGATGAAAAATGCACTACTTTGGCTGATCAAGTGGTTCAGAATATTGATGAGGTTAGTCAGTCCAACAGTCCTGAGCAAATGGTCACAGCCCAGGATTTCTTCACAGGAGCTTTGCTTCCACACTCACTTCATAGGGCAACCTCACTTCCTGTTGATGCAGTAGATGTTTAG 2037 0.4001 MGFQQNKNPEDLERLYSEIHLLKTLKHKNIMKFYTSWVDTANRHINFVTEMFTSGTLRQYRLKHRRVNIRAIKHWCRQILEGLLYLHSYDPPVIHRDLKCDNIFINGNQGEVKIGDLGLAAILRKSNAARCVGTPEFMAPEVYEEDYNELVDIYSFGMCILEMVTFEYPYSECNHPAQIYKKVVSGKKPEALYKVNNPEVRQFVEKCLATASLRLSAKELLEDPFLQIDDYGSDSKVVQYQRDCYQVTPLIRQPLNGIYSINDTLMSGYTDNLGGYGPVSELDYPQDDFEPSEIGLFECEEGDNLAEVDTTIKGSRREDDGIFLRIRIADKEGRVRNIYFPFDIETDTALSVANEMVAELDITDQDVTKLANMIDNEIATLVPEWKAEQIIEENSECSSANVCRNCAANGSLFDYVSSNNPCGKNLQFLRCSKNGCAAVHGRFEEITYQVEGSENSATEGEPDASRQSKGIHYTDIWAQRDDPELCHEELKDIHCDQAHEASHPSNIKEDGKTVNMDEQSDLNTKRPLSNPATNCAPLDYENEIRQELRWLKAKYQMQLRELRDHQLGGKPKFSSISPDTEKLEHGIGKDGILRLSATSNLKIQNNKPLLRSIFSGKHFHVDDEKCTTLADQVVQNIDEVSQSNSPEQMVTAQDFFTGALLPHSLHRATSLPVDAVDV 678
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca02g02385 678 Pfam Oxidative-stress-responsive kinase 1 C-terminal domain 324 378 IPR024678 GO:0004674|GO:0005524
Cca02g02385 678 Pfam Protein kinase domain 7 226 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca02g02385 678 SMART serkin_6 3 226 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca02g02385 678 ProSitePatterns Serine/Threonine protein kinases active-site signature. 93 105 IPR008271 GO:0004672|GO:0006468
Cca02g02385 678 PANTHER SERINE/THREONINE-PROTEIN KINASE WNK1-RELATED 7 667 - -
Cca02g02385 678 SUPERFAMILY Protein kinase-like (PK-like) 8 227 IPR011009 -
Cca02g02385 678 Gene3D - 321 410 - -
Cca02g02385 678 PANTHER SERINE/THREONINE-PROTEIN KINASE WNK WITH NO LYSINE -RELATED 7 667 - -
Cca02g02385 678 MobiDBLite consensus disorder prediction 517 531 - -
Cca02g02385 678 ProSiteProfiles Protein kinase domain profile. 1 226 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca02g02385 678 Gene3D Phosphorylase Kinase; domain 1 3 50 - -
Cca02g02385 678 MobiDBLite consensus disorder prediction 498 534 - -
Cca02g02385 678 CDD STKc_WNK 8 226 - -
Cca02g02385 678 Gene3D Transferase(Phosphotransferase) domain 1 52 231 - -
Cca02g02385 678 MobiDBLite consensus disorder prediction 498 516 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca02g02385 Cca-Chr2 44805294 44809357 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca02g02385 7 450 MAP Kinase Kinase Kinase AT5G28080 60.000 0.0 520
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK WNK_NRBP Cca02g02385 Pkinase 1.9e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca02g02385 K08867 - gmx:100804179 1201.81