Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca02g02357 ATGGACACCCCTGATAGGAGCAAGATCAACACCCCTCTTTCCCAATTCGAGGATTCGCCTGTATTTAACTATATCAGTAATCTATCTCCTATAGAGCCCGTTAAGTCAGTTCACATTACTCAGACATTCAACTCGCTTAGCTTTTCATCCCCTCCATCTGTTTTCACATCTCCCCATGTCAACTGTCACAAGGAATCCAGGTTCTTCAGGAGGCATAACCTTTTGGACACATCCAAGCCTAAGGTGCCGTCTGAAGATGCAAATAATGTTTATTCATGTGAAGAGACTCCTGCAGATTCAATTCATGATGCATGTCGTGAATCAAGAGAGTTACAGGAAAATACTGATAAAAGGGTTTCCACAGGAGATGCCTCAATTGAGCAATGTAATGAAAACCCAAATACCTCCTCAATTGAGCTTCCACAAGTCTTAAAATATAATTTTGGGAGCCCTGGGTATGATCCTCTACTCTGTGGTGATGAGGTTAACTCTCTTTTGGCATTGCCTGGCAAGCCAGGATCAGATGTTGCCTATGTCCCAGAAGGCTCGGAAAAAGGTTCAATTGAAGGTGAAATGCATCTTCCAGAATTATGTCAGATTGAGGAAAAACTTGAAGGCCAAGATTGTGGTGTGGATGGTTTAATCACTGAAGCCTCTGATCTGTTGAAGTTTAGCTCCCAAAATGTGACAGAAGCTTTTAAAGAACATGAAATTGAAGATCGTCCTTCTGAAGCAGCAGCAGCCACAGACACAAGTCAGAGACAGGACAATCTTGCCAATGTTGCTTTGATGGCTAGCAATCCAAGTGAGAAAATGGATGATAAGCTTGTTTATGTGACACACCGGGGTATACGGAGACGCTGCCTAGATTTTGAGATGGCCAGTGTGCAAAGGAAGAACTCAGATGATAATTCAAACACCAATTCTAGTACAGTGAAATCTGATGTGAGGAATGTTGGTAATGAAAAGCAACTGCTTCCTACAAAGCACAGTGGTGATTCACGGAGGTGTGTTTTGCCAGGAATTGGTTTGCACTTGAATGCACTTGCAACCTTCAACGACTGCAAAAACATAAAAATTGAGAACTTGTCATCTGGAAGGCAGCCTAATCTATCCAGTTCTTCATCCTTGCAACTCTCTGCAAGCCAAGAACATCAACTATCATTGGTAGCTATGTCAGTGGAAGGAGATCTGGAGCCATCAGAGAATGAGGTTCAGCCTGGTGAAGATTGTGCCCAGTCATTAGTTCACGTGGAAGGTGAAGATATCCAGCAGAATAGCCCAAAAAAGAAAAGGCGCAAGTTGGAACCAGCTGGGGAAGGGGAGTCGTGCAAACGTTGTAATTGTAAGAAATCAAAGTGTTTGAAGCTTTATTGTGAGTGCTTTGCTGCTGGAGTCTACTGCATAGAACCTTGTGCATGTCGTGATTGCTTCAACAAGCCTATTCATGTTGATACTGTTCTTCAAACTCGCCAGCAGATTGAATCTCGTAATCCACTTGCATTTGCTCCCAAAGTCATACGTAGTTCTGATTCTGTACCTGAAATTGGGGATGATCCTAACAAAACTCCAGCTTCAGCACGACACAAAAGAGGATGTAATTGCAAGAAATCAAGCTGCCTAAAGAAATATTGTGAATGTTATCAGGGTGGTGTTGGTTGTTCCATAAGCTGTAGATGTGAAGGATGCAAGAACACATTTGGTAGAAAGGATGGTTCTGTTCCTTCTGGAATAGGAGCCGAACCTGAAGAAGAAACAGAAGCGTGTGAAAAGGGTGTGGTGGAAAATGCTACACAGAAATATGAAATTCAGAATACTGAAGACCATCCAGATTGTGCTCTTGCTGCCACACCATTACAGCTTTCCAGACCATTGCTTCCATTACCCTTTTCATCAAAGGGTAAGCCACCAAGATCTTTTGTTACTACCATCTCTAGTTCTGGTTTGTTTGTCAGCCAAAAGCTTGGGAAATCAAACGCTTCACGGTCTCAACCTAAAATTGAAAAGCCTTTGCAAACTGTTCCGGATGATGATTCTCCTGCCACCTGCATCAAAACTTCTTCTCCAAATGGCAAGAGGATCTCCTCTCCTAATTGTGACGTTGGATCATCATCTCCTACTCGCAGAGGAGGGAGGAAGTTGATATTACAATCTATCCCTTCTTTTCCTTCTCTCACTCCTCACCATTAG 2190 0.4283 MDTPDRSKINTPLSQFEDSPVFNYISNLSPIEPVKSVHITQTFNSLSFSSPPSVFTSPHVNCHKESRFFRRHNLLDTSKPKVPSEDANNVYSCEETPADSIHDACRESRELQENTDKRVSTGDASIEQCNENPNTSSIELPQVLKYNFGSPGYDPLLCGDEVNSLLALPGKPGSDVAYVPEGSEKGSIEGEMHLPELCQIEEKLEGQDCGVDGLITEASDLLKFSSQNVTEAFKEHEIEDRPSEAAAATDTSQRQDNLANVALMASNPSEKMDDKLVYVTHRGIRRRCLDFEMASVQRKNSDDNSNTNSSTVKSDVRNVGNEKQLLPTKHSGDSRRCVLPGIGLHLNALATFNDCKNIKIENLSSGRQPNLSSSSSLQLSASQEHQLSLVAMSVEGDLEPSENEVQPGEDCAQSLVHVEGEDIQQNSPKKKRRKLEPAGEGESCKRCNCKKSKCLKLYCECFAAGVYCIEPCACRDCFNKPIHVDTVLQTRQQIESRNPLAFAPKVIRSSDSVPEIGDDPNKTPASARHKRGCNCKKSSCLKKYCECYQGGVGCSISCRCEGCKNTFGRKDGSVPSGIGAEPEEETEACEKGVVENATQKYEIQNTEDHPDCALAATPLQLSRPLLPLPFSSKGKPPRSFVTTISSSGLFVSQKLGKSNASRSQPKIEKPLQTVPDDDSPATCIKTSSPNGKRISSPNCDVGSSSPTRRGGRKLILQSIPSFPSLTPHH 729
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca02g02357 729 MobiDBLite consensus disorder prediction 298 318 - -
Cca02g02357 729 PANTHER PROTEIN TESMIN/TSO1-LIKE CXC 2 1 729 IPR044522 GO:0003700
Cca02g02357 729 Pfam Tesmin/TSO1-like CXC domain, cysteine-rich domain 445 480 IPR005172 -
Cca02g02357 729 Pfam Tesmin/TSO1-like CXC domain, cysteine-rich domain 531 566 IPR005172 -
Cca02g02357 729 MobiDBLite consensus disorder prediction 679 705 - -
Cca02g02357 729 ProSiteProfiles CRC domain profile. 443 568 IPR005172 -
Cca02g02357 729 MobiDBLite consensus disorder prediction 655 729 - -
Cca02g02357 729 PANTHER PROTEIN TESMIN/TSO1-LIKE CXC 2 1 729 - -
Cca02g02357 729 MobiDBLite consensus disorder prediction 297 334 - -
Cca02g02357 729 MobiDBLite consensus disorder prediction 234 255 - -
Cca02g02357 729 SMART CXC_2 528 569 IPR033467 -
Cca02g02357 729 SMART CXC_2 442 483 IPR033467 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca02g02357 Cca-Chr2 44387337 44392795 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca02g02357 16 729 CPP Transcription Factor Family AT4G14770 44.684 4.03e-162 481
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF CPP Cca02g02357 TCR 1.4e-11 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca02g02357 - - gmx:100811662 1144.41