Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca02g02353 ATGGCCTCTCATTCTCCAAAGAGAGAAGGCCCTTATCTTAATGTACTATTCCTCTTTGTGATTCTCATCTCCATCATCAACCCCTCACACCAAGCTTCTTCCCCTACTCTGCCCCCTCTAAACCCTAGACTCTCCAAAGCCTACACTGCCCTTCAAGCATGGAAACACTCAATCACCTCAGACCCCAAAAACTTCACTTCCAACTGGTGTGGCCCCCATGTATGCAACTACACCGGCATATACTGTGCACCTGCCCTAGATGACCCTTACATCTACACAGTGGCTGGAGTTGACCTAAAACATGCCCCCATCTCCGGTTCACTCCCTCAAGAACTTGGCCTCTTAACCGACCTAGCCCTTTTCCACATCAACTCCAACCGCTTCTGCGGTTCCCTCCCCAACACCTTCGACCAACTCACCCTTCTCCACGAACTCGACATCAGCAACAACCAATTCTCAGGACCATTCCCCGAGCCTCTTCTTTGCCTCTCTTCATTGAAATACTTGGATATCAGGTTCAACAACTTCCACGGCAACGTCCCCTCGCGCCTCTTCGACCTCAAACTCGATGCCCTTTTCATCAACAACAACAACTTCCAATTCTCCTTGCCTCAGAATTTCGGGAACAGTCCTGCTTCTGTGGTTGTGTTTGCCAACAATGACCTCAAGGGGTGTCTTCCTTCGAGCTTGGTCAACATGAAGGGTACCCTTAACGAGATTATCATCATGAACAGTGGCTTAACGGGGTGTTTGCCACCGGAGATAGGGGACTTGGAGAAAGTAACAGTGTTTGATGTCAGCTTCAATAAGTTGGTTGGAGAATTGCCTGAGTCATTGGGGAGAATGAAGAAGTTGGAACAGCTGAATGTGGCGCATAACATGTTGTCTGGCACGGTTCCCGAGAGTGTTTGCATGTTGCCGAGGTTGGAGAATTTCACGTACTCGTATAACTACTTCTGCACTGAGTCACCGCTGTGTCTCAAGTTGAAAGATAAAGATGATGCCAAGAATTGTCTTCCTTATAGACCATTGCAAAGGTCACGTGAGGAGTGTGAAGCTTTTTATGCACATCCTGTTCAGTGTAGTGCCTTCGGTTGTGTAACTccaccgccaccgccacctccgccgcctccaccaccgccaccgcctccaccaccacctccgccaccaccaccaccaccgccgccgcccccAGCGGCTTACTACCACTATCCCTGA 1218 0.4475 MASHSPKREGPYLNVLFLFVILISIINPSHQASSPTLPPLNPRLSKAYTALQAWKHSITSDPKNFTSNWCGPHVCNYTGIYCAPALDDPYIYTVAGVDLKHAPISGSLPQELGLLTDLALFHINSNRFCGSLPNTFDQLTLLHELDISNNQFSGPFPEPLLCLSSLKYLDIRFNNFHGNVPSRLFDLKLDALFINNNNFQFSLPQNFGNSPASVVVFANNDLKGCLPSSLVNMKGTLNEIIIMNSGLTGCLPPEIGDLEKVTVFDVSFNKLVGELPESLGRMKKLEQLNVAHNMLSGTVPESVCMLPRLENFTYSYNYFCTESPLCLKLKDKDDAKNCLPYRPLQRSREECEAFYAHPVQCSAFGCVTPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPAAYYHYP 405
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca02g02353 405 Pfam Leucine rich repeat N-terminal domain 48 82 IPR013210 -
Cca02g02353 405 Gene3D Ribonuclease Inhibitor 212 332 IPR032675 -
Cca02g02353 405 PANTHER LEUCINE-RICH REPEAT EXTENSIN-LIKE PROTEIN 3-RELATED 21 374 - -
Cca02g02353 405 PANTHER LEUCINE-RICH REPEAT EXTENSIN-LIKE PROTEIN 6 21 374 - -
Cca02g02353 405 Gene3D Ribonuclease Inhibitor 45 211 IPR032675 -
Cca02g02353 405 SUPERFAMILY L domain-like 47 326 - -
Cca02g02353 405 MobiDBLite consensus disorder prediction 370 405 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca02g02353 Cca-Chr2 44356596 44358028 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca02g02353 26 366 Leucine-rich Repeat extension Gene Families AT3G22800 66.764 7.70e-163 464
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca02g02353 - - gmx:100818195 654.055