Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca02g02351 ATGGCTGGTAGGTTGCCTGGTGTTGGCTTGCTTCCAAGGAAGAGAACAGAGCAGAACCATAGATATGATTATGATTATGCTTATGCTTACGAACACCATCTCCATGCCACTTACCTAAGGGACCAACCATGGATTTCACTCACTCTCTTAGATGAAACTGCTCTCAAGGCCAGACAACGCCTTCACAAAAAACTTGGACACTTTTTTTCCTCATACAGGTCAAGTGAGAGTCCAAGAAAAGAGGGAAAGCAGAAGGAGGATGGAGGAATAGGTAGGAAGCTATTAGAGAGTTCATGGTTACTGCGCGGGAACAAGTTTAAGAAAGAAAGAAAAGTGTGTGCTGTTTGTCTAGAAGATTTTGGACAAGAGAAACAGATTATGAACCTTTCATGCTCCCATAAGTATCATTCAGCATGCCTTATTCCATGGCTTCAAGCACATCCACATTGTCCCTATTGCCGAACCCCAGTTGTGCCCTGA 480 0.4375 MAGRLPGVGLLPRKRTEQNHRYDYDYAYAYEHHLHATYLRDQPWISLTLLDETALKARQRLHKKLGHFFSSYRSSESPRKEGKQKEDGGIGRKLLESSWLLRGNKFKKERKVCAVCLEDFGQEKQIMNLSCSHKYHSACLIPWLQAHPHCPYCRTPVVP 159
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca02g02351 159 ProSiteProfiles Zinc finger RING-type profile. 113 154 IPR001841 -
Cca02g02351 159 CDD RING-H2_PA-TM-RING 112 154 - -
Cca02g02351 159 SUPERFAMILY RING/U-box 112 158 - -
Cca02g02351 159 SMART ring_2 113 153 IPR001841 -
Cca02g02351 159 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 70 158 IPR013083 -
Cca02g02351 159 PANTHER ZINC FINGER, C3HC4 TYPE (RING FINGER) PROTEIN 47 156 - -
Cca02g02351 159 Pfam Ring finger domain 112 154 IPR001841 -
Cca02g02351 159 PANTHER RING FINGER AND PROTEASE ASSOCIATED DOMAIN-CONTAINING 47 156 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca02g02351 Cca-Chr2 44338330 44339279 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca02g02351 105 158 C3H Transcription Factor Family AT1G49850 40.741 1.33e-11 58.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca02g02351 - - gmx:100527548 265.003