Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca02g02343 ATGAATCCTCATGGTCGAGTGAAGGAAGAGTTTCTTGGAGAAAGTTCTTCCTTTGATCAAAAACCATTCATGGTTGTTccccaaccaatcgaggggcttcatgaaactggtcctcctccattcctcacaaaaacatacgacatcgttgatgacccttccacaaaccatattgtttcctggagcaaagggaacaacagcttcatcgtgtgggatccacaggccttttccatagcccttctccccaaattcttcaagcacaacaatttctccagttttgtcaggcaactcaacacctatGGGTTTAAAAAGGTTGACCCAGATAGGTGGGAGTTTGCTAATGAGCTGTTTCTTAGAGGGAAAAAGATTCTTCTGAAGAGCATTAGAAGGAGGAAAGCAAATCACCAATCTCAGGCGATGCAGCAAGATGATGTTGAGTCTTGTGTTGAGGTGGGGCAGTTTGGTTTAGATGAAGAAGTTGATCGGTTGAGGCGTGACAGGCAGGTTCTGATGGTGGAGTTGGTGAAACTCAGACAACAGCAACAAAACACCAGAGCTCACCTTCAAGCAATGGAAGGAAGGCTCAAGAGGACTGAACAGAAACAGCAACAAATGATGAATTTCTTGGCCAGGGCTATGCAGAATCCCAACTTCGTTCAACAATTGGTTCAGCAAACGGAGTGGAGAAAGGAGCTTGAGGAAGCTTTTTCCAAGAAGAGGAGGAGACCTATTGAGCAAGGGCCTAGTGATGTTGTTGAAGTAGGTGACTTAGGTTGTGCTGAAGAGTCCTCAACTTTCGTTAAACTTGAACCTCGAGAGTGTACTGACAAGATATTAGAGTTTGAAGTACCTGATCTGGACTTTTATTCTTTGAATCTTGAGGAGAGTAGTGGAAGCCAAAAGAGAACGGAGGAAGACCATATCCAACTTGAAAGTAGAGATAATGATATTGATGAAGTGTTTTGGCAAGATTTGCTTAATGAGGGTATTAAACATCAAAGTGTTGAAGATGTAGATGTATTGGCTGAGCAACTTGGTTATTTAGCCTCTAGTCCTAATAAATAG 1062 0.3333 MNPHGRVKEEFLGESSSFDQKPFMVVPQPIEGLHETGPPPFLTKTYDIVDDPSTNHIVSWSKGNNSFIVWDPQAFSIALLPKFFKHNNFSSFVRQLNTYGFKKVDPDRWEFANELFLRGKKILLKSIRRRKANHQSQAMQQDDVESCVEVGQFGLDEEVDRLRRDRQVLMVELVKLRQQQQNTRAHLQAMEGRLKRTEQKQQQMMNFLARAMQNPNFVQQLVQQTEWRKELEEAFSKKRRRPIEQGPSDVVEVGDLGCAEESSTFVKLEPRECTDKILEFEVPDLDFYSLNLEESSGSQKRTEEDHIQLESRDNDIDEVFWQDLLNEGIKHQSVEDVDVLAEQLGYLASSPNK 353
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca02g02343 353 PRINTS Heat shock factor (HSF) domain signature 41 64 IPR000232 GO:0003700|GO:0006355|GO:0043565
Cca02g02343 353 PRINTS Heat shock factor (HSF) domain signature 79 91 IPR000232 GO:0003700|GO:0006355|GO:0043565
Cca02g02343 353 PRINTS Heat shock factor (HSF) domain signature 92 104 IPR000232 GO:0003700|GO:0006355|GO:0043565
Cca02g02343 353 PANTHER HEAT STRESS TRANSCRIPTION FACTOR A-6B 9 334 - -
Cca02g02343 353 ProSitePatterns HSF-type DNA-binding domain signature. 80 104 IPR000232 GO:0003700|GO:0006355|GO:0043565
Cca02g02343 353 Gene3D - 33 131 IPR036388 -
Cca02g02343 353 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 9 334 IPR027725 -
Cca02g02343 353 SUPERFAMILY "Winged helix" DNA-binding domain 37 130 IPR036390 -
Cca02g02343 353 SMART hsfneu3 37 130 IPR000232 GO:0003700|GO:0006355|GO:0043565
Cca02g02343 353 Pfam HSF-type DNA-binding 41 130 IPR000232 GO:0003700|GO:0006355|GO:0043565
Cca02g02343 353 Coils Coil 159 200 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca02g02343 Cca-Chr2 44244477 44246603 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca02g02343 24 350 HSF AT3G22830 55.587 8.70e-131 378
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HSF Cca02g02343 HSF_DNA-bind 6.8e-31 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca02g02343 K09419 - gmx:100809515 558.525
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca06g01936 06 34630448 34634371 Cca02g02343 02 44244477 44246603 PCT