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Gene search
Sequence information
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Gene
Cds
Cds_length
GC_content
Pep
Pep_length
Cca02g02343
ATGAATCCTCATGGTCGAGTGAAGGAAGAGTTTCTTGGAGAAAGTTCTTCCTTTGATCAAAAACCATTCATGGTTGTTccccaaccaatcgaggggcttcatgaaactggtcctcctccattcctcacaaaaacatacgacatcgttgatgacccttccacaaaccatattgtttcctggagcaaagggaacaacagcttcatcgtgtgggatccacaggccttttccatagcccttctccccaaattcttcaagcacaacaatttctccagttttgtcaggcaactcaacacctatGGGTTTAAAAAGGTTGACCCAGATAGGTGGGAGTTTGCTAATGAGCTGTTTCTTAGAGGGAAAAAGATTCTTCTGAAGAGCATTAGAAGGAGGAAAGCAAATCACCAATCTCAGGCGATGCAGCAAGATGATGTTGAGTCTTGTGTTGAGGTGGGGCAGTTTGGTTTAGATGAAGAAGTTGATCGGTTGAGGCGTGACAGGCAGGTTCTGATGGTGGAGTTGGTGAAACTCAGACAACAGCAACAAAACACCAGAGCTCACCTTCAAGCAATGGAAGGAAGGCTCAAGAGGACTGAACAGAAACAGCAACAAATGATGAATTTCTTGGCCAGGGCTATGCAGAATCCCAACTTCGTTCAACAATTGGTTCAGCAAACGGAGTGGAGAAAGGAGCTTGAGGAAGCTTTTTCCAAGAAGAGGAGGAGACCTATTGAGCAAGGGCCTAGTGATGTTGTTGAAGTAGGTGACTTAGGTTGTGCTGAAGAGTCCTCAACTTTCGTTAAACTTGAACCTCGAGAGTGTACTGACAAGATATTAGAGTTTGAAGTACCTGATCTGGACTTTTATTCTTTGAATCTTGAGGAGAGTAGTGGAAGCCAAAAGAGAACGGAGGAAGACCATATCCAACTTGAAAGTAGAGATAATGATATTGATGAAGTGTTTTGGCAAGATTTGCTTAATGAGGGTATTAAACATCAAAGTGTTGAAGATGTAGATGTATTGGCTGAGCAACTTGGTTATTTAGCCTCTAGTCCTAATAAATAG
1062
0.3333
MNPHGRVKEEFLGESSSFDQKPFMVVPQPIEGLHETGPPPFLTKTYDIVDDPSTNHIVSWSKGNNSFIVWDPQAFSIALLPKFFKHNNFSSFVRQLNTYGFKKVDPDRWEFANELFLRGKKILLKSIRRRKANHQSQAMQQDDVESCVEVGQFGLDEEVDRLRRDRQVLMVELVKLRQQQQNTRAHLQAMEGRLKRTEQKQQQMMNFLARAMQNPNFVQQLVQQTEWRKELEEAFSKKRRRPIEQGPSDVVEVGDLGCAEESSTFVKLEPRECTDKILEFEVPDLDFYSLNLEESSGSQKRTEEDHIQLESRDNDIDEVFWQDLLNEGIKHQSVEDVDVLAEQLGYLASSPNK
353
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Annotation information
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Seq ID
Length
Analysis
Description
Start
End
IPR
GO
Cca02g02343
353
PRINTS
Heat shock factor (HSF) domain signature
41
64
IPR000232
GO:0003700|GO:0006355|GO:0043565
Cca02g02343
353
PRINTS
Heat shock factor (HSF) domain signature
79
91
IPR000232
GO:0003700|GO:0006355|GO:0043565
Cca02g02343
353
PRINTS
Heat shock factor (HSF) domain signature
92
104
IPR000232
GO:0003700|GO:0006355|GO:0043565
Cca02g02343
353
PANTHER
HEAT STRESS TRANSCRIPTION FACTOR A-6B
9
334
-
-
Cca02g02343
353
ProSitePatterns
HSF-type DNA-binding domain signature.
80
104
IPR000232
GO:0003700|GO:0006355|GO:0043565
Cca02g02343
353
Gene3D
-
33
131
IPR036388
-
Cca02g02343
353
PANTHER
HEAT SHOCK TRANSCRIPTION FACTOR
9
334
IPR027725
-
Cca02g02343
353
SUPERFAMILY
"Winged helix" DNA-binding domain
37
130
IPR036390
-
Cca02g02343
353
SMART
hsfneu3
37
130
IPR000232
GO:0003700|GO:0006355|GO:0043565
Cca02g02343
353
Pfam
HSF-type DNA-binding
41
130
IPR000232
GO:0003700|GO:0006355|GO:0043565
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Duplication type information
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Gene
Chromosome
Start
End
Duplicated_type
Cca02g02343
Cca-Chr2
44244477
44246603
Wgd
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Functional genes information
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Gene
Gene_start
Gene_end
Function
Ath_gene
Identity(%)
E-value
Score
Cca02g02343
24
350
HSF
AT3G22830
55.587
8.70e-131
378
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Transcription factors information
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Regulatory Factors
Family
Gene
Hmm_acc
Hmm_name
E_value
Clan
TF
HSF
Cca02g02343
HSF_DNA-bind
6.8e-31
CL0123
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Pathway information
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Query
KO
Definition
Second KO
KEGG Genes ID
GHOSTX Score
Cca02g02343
K09419
-
gmx:100809515
558.525
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Event-related genes
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Gene_1
Chr_1
Start_1
End_1
Gene_2
Chr_2
Start_2
End_2
Event_name
Cca06g01936
06
34630448
34634371
Cca02g02343
02
44244477
44246603
PCT
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