Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cca02g02343 | ATGAATCCTCATGGTCGAGTGAAGGAAGAGTTTCTTGGAGAAAGTTCTTCCTTTGATCAAAAACCATTCATGGTTGTTccccaaccaatcgaggggcttcatgaaactggtcctcctccattcctcacaaaaacatacgacatcgttgatgacccttccacaaaccatattgtttcctggagcaaagggaacaacagcttcatcgtgtgggatccacaggccttttccatagcccttctccccaaattcttcaagcacaacaatttctccagttttgtcaggcaactcaacacctatGGGTTTAAAAAGGTTGACCCAGATAGGTGGGAGTTTGCTAATGAGCTGTTTCTTAGAGGGAAAAAGATTCTTCTGAAGAGCATTAGAAGGAGGAAAGCAAATCACCAATCTCAGGCGATGCAGCAAGATGATGTTGAGTCTTGTGTTGAGGTGGGGCAGTTTGGTTTAGATGAAGAAGTTGATCGGTTGAGGCGTGACAGGCAGGTTCTGATGGTGGAGTTGGTGAAACTCAGACAACAGCAACAAAACACCAGAGCTCACCTTCAAGCAATGGAAGGAAGGCTCAAGAGGACTGAACAGAAACAGCAACAAATGATGAATTTCTTGGCCAGGGCTATGCAGAATCCCAACTTCGTTCAACAATTGGTTCAGCAAACGGAGTGGAGAAAGGAGCTTGAGGAAGCTTTTTCCAAGAAGAGGAGGAGACCTATTGAGCAAGGGCCTAGTGATGTTGTTGAAGTAGGTGACTTAGGTTGTGCTGAAGAGTCCTCAACTTTCGTTAAACTTGAACCTCGAGAGTGTACTGACAAGATATTAGAGTTTGAAGTACCTGATCTGGACTTTTATTCTTTGAATCTTGAGGAGAGTAGTGGAAGCCAAAAGAGAACGGAGGAAGACCATATCCAACTTGAAAGTAGAGATAATGATATTGATGAAGTGTTTTGGCAAGATTTGCTTAATGAGGGTATTAAACATCAAAGTGTTGAAGATGTAGATGTATTGGCTGAGCAACTTGGTTATTTAGCCTCTAGTCCTAATAAATAG | 1062 | 0.3333 | MNPHGRVKEEFLGESSSFDQKPFMVVPQPIEGLHETGPPPFLTKTYDIVDDPSTNHIVSWSKGNNSFIVWDPQAFSIALLPKFFKHNNFSSFVRQLNTYGFKKVDPDRWEFANELFLRGKKILLKSIRRRKANHQSQAMQQDDVESCVEVGQFGLDEEVDRLRRDRQVLMVELVKLRQQQQNTRAHLQAMEGRLKRTEQKQQQMMNFLARAMQNPNFVQQLVQQTEWRKELEEAFSKKRRRPIEQGPSDVVEVGDLGCAEESSTFVKLEPRECTDKILEFEVPDLDFYSLNLEESSGSQKRTEEDHIQLESRDNDIDEVFWQDLLNEGIKHQSVEDVDVLAEQLGYLASSPNK | 353 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cca02g02343 | 353 | PRINTS | Heat shock factor (HSF) domain signature | 41 | 64 | IPR000232 | GO:0003700|GO:0006355|GO:0043565 | |
Cca02g02343 | 353 | PRINTS | Heat shock factor (HSF) domain signature | 79 | 91 | IPR000232 | GO:0003700|GO:0006355|GO:0043565 | |
Cca02g02343 | 353 | PRINTS | Heat shock factor (HSF) domain signature | 92 | 104 | IPR000232 | GO:0003700|GO:0006355|GO:0043565 | |
Cca02g02343 | 353 | PANTHER | HEAT STRESS TRANSCRIPTION FACTOR A-6B | 9 | 334 | - | - | |
Cca02g02343 | 353 | ProSitePatterns | HSF-type DNA-binding domain signature. | 80 | 104 | IPR000232 | GO:0003700|GO:0006355|GO:0043565 | |
Cca02g02343 | 353 | Gene3D | - | 33 | 131 | IPR036388 | - | |
Cca02g02343 | 353 | PANTHER | HEAT SHOCK TRANSCRIPTION FACTOR | 9 | 334 | IPR027725 | - | |
Cca02g02343 | 353 | SUPERFAMILY | "Winged helix" DNA-binding domain | 37 | 130 | IPR036390 | - | |
Cca02g02343 | 353 | SMART | hsfneu3 | 37 | 130 | IPR000232 | GO:0003700|GO:0006355|GO:0043565 | |
Cca02g02343 | 353 | Pfam | HSF-type DNA-binding | 41 | 130 | IPR000232 | GO:0003700|GO:0006355|GO:0043565 | |
Cca02g02343 | 353 | Coils | Coil | 159 | 200 | - | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Cca02g02343 | Cca-Chr2 | 44244477 | 44246603 | Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Cca02g02343 | 24 | 350 | HSF | AT3G22830 | 55.587 | 8.70e-131 | 378 |
Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
---|---|---|---|---|---|---|---|
TF | HSF | Cca02g02343 | HSF_DNA-bind | 6.8e-31 | CL0123 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cca02g02343 | K09419 | - | gmx:100809515 | 558.525 |
Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
---|---|---|---|---|---|---|---|---|---|
Cca06g01936 | 06 | 34630448 | 34634371 | Cca02g02343 | 02 | 44244477 | 44246603 | PCT |