Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca02g02338 ATGCAGGAAGAGAGTGAGTGTTTCGAGTGCCTCCAACTTCGAATTAAGTCTGATTTCTCGGAGCAAGTCTTCTTCAATTATGCCATCCAAACTTCTGCTTTTCCTTTCGGATCTTCAGCTATCGTCAATATTTCTGGTGCAGCTGATGGTGAAGCTTCTGGCGGTCAATTTATACTGCAGAACCTGTCGAGTCGTGAGAAGAATTGTTTTATAAACTATGTAAATGAATATATTTTGGATAGCGGTGAAAGCAGTACTAGGAGTAGTGATCCTGATATTGGAGGCCGTCAAGATAATACTGTTGTTAATGGTAGAACTACTTCATCAGATGATTCTGAAAGTGGAAAAGCTTTTTCCGGAAACACGACTTGTAGTCATTCTGGAAGGTTTTCTTGCTCGAGGACAATCGCTTCACTTGCCCCCATTGCTCGTGTGGGAGTGTCTTCCTATTCCACTTTTCAAGAGGTCTCCACTGATTTCTTGTCTGGTTTAATCGAAGATCACGTGTTAGATTCCCTTGATCTCTTCATTGAAGGGAAAGCATCTGGACGGGACAGTGTAAATTTCCTTAGTATAATTGGGTTGCCATCATTTGAGGAGGATACTTCTCCAGGCTCTTTGAGGCATCCAAACATAGCTCCTGTCCTTGCGATTTTTAAAACATCTGATCACGTTAACGTGGTGCTTCCTAAGACTCCATACAACTTGGAAAGTATTCTTCATTTTAACCCCAATGCATTAAAGTCTGACTGGAATAGAAGATTTCTTATGTATCAGCTACTCTCAGCCTTATCGTACATACATGGTTTAGGGGTTTCCCATGGTAATATATGCCCATCCAATATCATGTTGTCGGACTCGTTATGGTCTTGGCTCAGCTTATGGAACAAACCTGTATTGGAATTTAATTCAACTTTACGGGAGAATGAAAATGTTAACCCTGAACCTGCAAGAATTGGTTGTTGTAATATTGGTTGTCATTCTTATGGCCTTTATGCTGATCTAAAGCTTTCTCCAACAATAGATTGGCATTCTTGCTTTCATCAATGGTGGAAAGGAGAACTAAGCAATTTTGAATATTTACTTATCTTAAACAGATTAGCCGGAAGAAGGTGGGGGGACCATACATTTCACCCAGTAATGCCTTGGGTAATTGATTTTAGCTCAAAACCTGATGATAATTGTGATGCAGGGTGGCGAGATTTGAGCAAGAGTAAATGGCGCTTGGCTAAAGGTGATGAACAATTGGATTTCACTTATTCAACGTCTGAAATCCCTCATCATGTTTCAGATGAATGTCTGTCTGAATTGGCTGTCTGCAGTTATAAAGCAAGAAGATTGCCTTTGAGTGTTCTCCGAATGGCTGTTCGGTCTGTCTATGAACCTAATGAATATCCTTCAACAATGCAGAGGCTCTATCAATGGACCCCTGATGAATGCATTCCAGAGTTTTACTGTGATGCCCAAATTTTCAAGTCAATACATGATGGAATGGCTGATTTGGCTGTACCCTCTTGGGCCGAGAGTCCTGAGGATTTCATTAAATTGCATCGTGATGCACTAGAAAGTAATAGGGTGTCATTTCAACTCCATCATTGGATAGATATAACCTTTGGCTACAAAATGTCTGGCCAGGCAGCTCTTGCTGCTAAGAATGTTATGCTTCCCCTATCAGATCCCATGATGCCAAAATCAACAGGACGGCGTCAACTCTTTACACAACCACACCCCGTCCGTCATGCCACTGCCAGAGGAAAACGTCATGGTTCCAATAAATATGCCAAAGTTTTGAGTCAAGCAAATGAAATGCACCGAGAGACATCTCTTCTATCTGAAACTGCTTATCTACAAGAATTAGAGCAAGCATCTACATTTTCCGAACATGCTAGGCATTTGAATGCATATTACCATTATCCCTTAAATCAAATGACAGGGAAGAACATCTCATCGTTGGGAGATCCAACAATAGAGACATTTAGTAGAACTATAAGCAAACTGTCTTTGATTGACAGAAATTACCAGGTGCCGTATAAAATGAATAGAATTTCTTTTCTTCAACATATGAAAGAGGAAAACGAAGGCTCCTCTGGATATCCAGACTTGCTACTTTGGAAGCAGAAACTATCTTCTTCAAGACTTTGCACTGAAGATGTTGCTAGGGACATATTTTCTATTGGTTGTCTCTTGGCTGAACTTCATCTTTGCAGGCCGCTCTTTGATCTAATCTCATTGGAAATATACTTGAAAGATGGAACCTTACCTGGATTTCTGCAGGATCTACCTCCTGATATTAAATTACTTGTTGAAGCATGCATCCAAAAGGATTGGATGAGGAGGCCATCTGCCAAAATTCTTCTGGAATCACCTTATTTTCCAAAGACTGTCAAATCCTCCTACTTGTTTCTTGCTCCACTTCAGCTTGTAGCTAAAGATGAAACTCGTCTTCGATATGCTGCAAATCTCGCAAAGCATGGAGCTCTCAAGGAAATGGGTGCATTTGCAACTGAAATTTGCGCTGCTTATTGCTTACCACTTATAGTGAATGCTGTGAGTGATATCGAAGCTGAATGGGCATATATGCTACTGAAGGAATTCATGAAATGCTTAACAATGCAAGCAGTAAAAACGTTAATCTTGCCAACCATACAGAAAATTTTACAGACCACAGGTTATTTACGATTAAAGGTTTCCCTTCTACAAGATTCATTTGTACAGGAAATATGGAATCGAGTTGGTAAACAAGCATACCTGGAAACTATTCATCCATTGGTCTTGTCAAACTTGTACATTTCTCCAGATAAAAGTTCAGCTTCCTCTGCTTCAGTGCTTCTAATCAGTTCTAGTGAGGAGCTTGGTGTACCTATTACCATCCATCAGACTATCTTGCCTCTTGTTCACTGCTTTGGGAAAGGACTATGTGCGGATGGCATTGACGTGCTGATCAGAATTGGTGGCATTTTTGGAGAATCGTTTATCATCAAGCAGATGGTACCATTACTGAAAAATGTTGTTCGTTCCTTCATTGATGTGTCTTGCATGAATAAGCCTGATCCTGTCCAGAGTTGGAGTGCTTTAGCACTTATTGATTGCATGATGACTTTGGATGGGCTTATAGCTTTCTTGACAGAAGATGTCATTGTAAAGGAGCTGCTTGAAGACCTAAGTTGCATACACATTGGGGTTCTTATGCAGAAACATATGGAAATTGCAGTGCTTCAGTTTGCTGCTACTACTCTTTTTGGAATTTGTCAGCGGATTGGAGCAGATTTGACAGCATTGCATATTCTTCCAAAACTTAAAGAACTATTTGATGAGCTTGCTTTCTCCCAGGAAATTTCTAAAGGTTCAACTACTGTTGGCAGAAACTTGAAGGTTGGCAAAATAAAAATTGGAGGGAACTTGCATATTGAAAGTCGTATGGATTTAGTGTCGGTTCTCTATCCTTCCTTTGCATCTCTTCTTGGGATAGAGAAACTTCGTCAATGCTGTGCCACATGGTTGATTCTTGAACAATATCTTCTACGTCATCATAATTGGAAGTGGGAATATGCAGGAGAATCATCAAAAAACGGCTCAGAAAATATTATTGCTAGAAGACCTGTAGCCCAGGGATTTATATCTGAATACAATCCTGCAAAGCTGTTACTTAATGGGGTTGGATGGTCGATTCCACAATCCCAAGGAAGAAGTGCCAAAAATTTGATCCCTCAGAGACGACCATTAAAAGTTCATCAAAGTCAAGTAGTAATGCAAGAAGGCATGTCATACCAAATGAACCACGATCCCTGGTTTTGGTTCCCTAGTCCAGCCACCATCTGGGATGGGCCTGAATTTCTTGGGAGGGTGGGTATTCAGAAAGAAGAATTTCCATGGAAGATTAGAGCATCTGTTATATACTCTATACGGGCACATCATGGAGCAGTGAGGTCTCTGGCTGTTCAAGATGAATGTACTGTTTTTACTGCAGGAATTGGCCAAGGATATAAAGGAAGTGTTCAGAAATGGGAATTGAGCCGAACTAACTGTCTGTCCAGCTATCATGGCCATGAGGAGGTTGTGAATGATATTTGCATCTTATCATCTAGTGGAAGAGTTGCATCTTGTGATGGAACAATTCACATTTGGAATAGTCAAACAGGGAAGCAAATATTAGTATTTGCTGAGTCCCAAACAGAAACTGGCAATCCTACAAGCCATCCATCCTCTGCACCAAAAATTAACAGTGACCAAGCTAACGTGCTTAATTTGAATACACTTTCAAATGGAATACTGTCTAGTGCTTTTGATTCAAGTCTTTATACTTGTATGCATCAATTATCCTCCGCTGGAACTCTTGTAGTTGGCACTGGAAATGGTGCTCTGAGGTTCATTGATGTTGCTCGAGGTCAAAAGCTTCATATGTGGAGAGGCGAATCTACTGAATCTAGTTTTCCTTCCCTTATTTCTGCCATTTGTTCCACTGGCTCTGAGAGGATGCAAGCAGGTGGAATTTCCACTTTGCCATCTTTTATTGCAGCCGGACTAAGTTCTGGTCACTGTAAATTATTTGATGCAAAGAGTGGAAATGTCATTTCCTCTTGGCGAGCTCACGATGCATATGTGACAAAGTTGGCAGCACCTGAGGAACATCTCCTTGTTTCCAGCTCTCTGGATAGAACTTTACGAGTCTGGGACTTAAGAATGAATTTGCCATTACAGCCCATTATCTACAGAGGTCATTCAGATGGCATATCCAGTTTCTCCATTTGGGGCCAAGATGTTATTTCAATTTCCCGGAATAGGATTGGGCTTCTCTCCTTATCTAAATCTGCCAATGAAACAGATGGGCAGCATCGCATTATCCCCCAGAAACTCTATGTATCTGATAATGGAATGAGAAGCTTGTCAGCGTTATCATGTATTAGTATACTCCCATTTTCTCGGTTGTTTCTCATTGGAACTGAAGATGGTTATCTGAGAATCAGTTGTTAA 4971 0.4066 MQEESECFECLQLRIKSDFSEQVFFNYAIQTSAFPFGSSAIVNISGAADGEASGGQFILQNLSSREKNCFINYVNEYILDSGESSTRSSDPDIGGRQDNTVVNGRTTSSDDSESGKAFSGNTTCSHSGRFSCSRTIASLAPIARVGVSSYSTFQEVSTDFLSGLIEDHVLDSLDLFIEGKASGRDSVNFLSIIGLPSFEEDTSPGSLRHPNIAPVLAIFKTSDHVNVVLPKTPYNLESILHFNPNALKSDWNRRFLMYQLLSALSYIHGLGVSHGNICPSNIMLSDSLWSWLSLWNKPVLEFNSTLRENENVNPEPARIGCCNIGCHSYGLYADLKLSPTIDWHSCFHQWWKGELSNFEYLLILNRLAGRRWGDHTFHPVMPWVIDFSSKPDDNCDAGWRDLSKSKWRLAKGDEQLDFTYSTSEIPHHVSDECLSELAVCSYKARRLPLSVLRMAVRSVYEPNEYPSTMQRLYQWTPDECIPEFYCDAQIFKSIHDGMADLAVPSWAESPEDFIKLHRDALESNRVSFQLHHWIDITFGYKMSGQAALAAKNVMLPLSDPMMPKSTGRRQLFTQPHPVRHATARGKRHGSNKYAKVLSQANEMHRETSLLSETAYLQELEQASTFSEHARHLNAYYHYPLNQMTGKNISSLGDPTIETFSRTISKLSLIDRNYQVPYKMNRISFLQHMKEENEGSSGYPDLLLWKQKLSSSRLCTEDVARDIFSIGCLLAELHLCRPLFDLISLEIYLKDGTLPGFLQDLPPDIKLLVEACIQKDWMRRPSAKILLESPYFPKTVKSSYLFLAPLQLVAKDETRLRYAANLAKHGALKEMGAFATEICAAYCLPLIVNAVSDIEAEWAYMLLKEFMKCLTMQAVKTLILPTIQKILQTTGYLRLKVSLLQDSFVQEIWNRVGKQAYLETIHPLVLSNLYISPDKSSASSASVLLISSSEELGVPITIHQTILPLVHCFGKGLCADGIDVLIRIGGIFGESFIIKQMVPLLKNVVRSFIDVSCMNKPDPVQSWSALALIDCMMTLDGLIAFLTEDVIVKELLEDLSCIHIGVLMQKHMEIAVLQFAATTLFGICQRIGADLTALHILPKLKELFDELAFSQEISKGSTTVGRNLKVGKIKIGGNLHIESRMDLVSVLYPSFASLLGIEKLRQCCATWLILEQYLLRHHNWKWEYAGESSKNGSENIIARRPVAQGFISEYNPAKLLLNGVGWSIPQSQGRSAKNLIPQRRPLKVHQSQVVMQEGMSYQMNHDPWFWFPSPATIWDGPEFLGRVGIQKEEFPWKIRASVIYSIRAHHGAVRSLAVQDECTVFTAGIGQGYKGSVQKWELSRTNCLSSYHGHEEVVNDICILSSSGRVASCDGTIHIWNSQTGKQILVFAESQTETGNPTSHPSSAPKINSDQANVLNLNTLSNGILSSAFDSSLYTCMHQLSSAGTLVVGTGNGALRFIDVARGQKLHMWRGESTESSFPSLISAICSTGSERMQAGGISTLPSFIAAGLSSGHCKLFDAKSGNVISSWRAHDAYVTKLAAPEEHLLVSSSLDRTLRVWDLRMNLPLQPIIYRGHSDGISSFSIWGQDVISISRNRIGLLSLSKSANETDGQHRIIPQKLYVSDNGMRSLSALSCISILPFSRLFLIGTEDGYLRISC 1656
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca02g02338 1656 Gene3D - 1497 1655 IPR015943 GO:0005515
Cca02g02338 1656 Gene3D - 1291 1496 IPR015943 GO:0005515
Cca02g02338 1656 Pfam Protein kinase domain 206 285 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca02g02338 1656 Pfam Beige/BEACH domain 349 559 IPR000409 -
Cca02g02338 1656 ProSiteProfiles Protein kinase domain profile. 139 476 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca02g02338 1656 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 1527 1560 - -
Cca02g02338 1656 Gene3D Transferase(Phosphotransferase) domain 1 203 301 - -
Cca02g02338 1656 ProSiteProfiles BEACH domain profile. 335 605 IPR000409 -
Cca02g02338 1656 SUPERFAMILY Protein kinase-like (PK-like) 717 802 IPR011009 -
Cca02g02338 1656 CDD PKc 206 287 - -
Cca02g02338 1656 SUPERFAMILY Protein kinase-like (PK-like) 206 292 IPR011009 -
Cca02g02338 1656 ProSitePatterns Trp-Asp (WD) repeats signature. 1545 1559 IPR019775 -
Cca02g02338 1656 SMART Beach_2 347 579 IPR000409 -
Cca02g02338 1656 SUPERFAMILY BEACH domain 326 579 IPR036372 -
Cca02g02338 1656 Gene3D Transferase(Phosphotransferase) domain 1 701 799 - -
Cca02g02338 1656 MobiDBLite consensus disorder prediction 82 120 - -
Cca02g02338 1656 Gene3D BEACH domain 339 579 IPR036372 -
Cca02g02338 1656 ProSiteProfiles Trp-Asp (WD) repeats profile. 1527 1560 IPR001680 GO:0005515
Cca02g02338 1656 CDD Beach 349 579 IPR000409 -
Cca02g02338 1656 SUPERFAMILY WD40 repeat-like 1297 1654 IPR036322 GO:0005515
Cca02g02338 1656 Pfam WD domain, G-beta repeat 1341 1376 IPR001680 GO:0005515
Cca02g02338 1656 Pfam WD domain, G-beta repeat 1522 1558 IPR001680 GO:0005515
Cca02g02338 1656 SMART WD40_4 1621 1656 IPR001680 GO:0005515
Cca02g02338 1656 SMART WD40_4 1520 1558 IPR001680 GO:0005515
Cca02g02338 1656 SMART WD40_4 1339 1376 IPR001680 GO:0005515
Cca02g02338 1656 SMART WD40_4 1294 1336 IPR001680 GO:0005515
Cca02g02338 1656 PANTHER GH12955P 1 1656 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca02g02338 Cca-Chr2 44185853 44195495 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CDKL-Cr Cca02g02338 Beach 1e-44 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca02g02338 K17601 - gmx:100810047 3053.46