Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca02g02335 ATGCAGCTTCTTCACTCCGACAAGCCCGCGCCCGAGCGCCGCGACTCCCCGGAGAATCCCGACGAACCCAACGCCGCGCCCGATTCTCTCGACTCCGGAACTGACGACGGCGCGGCTCTCGACGTCACCGGAAAGACCTTCGAATTTCCGGCGGCGGAGAACGCCGATGACTCTGTTGAGAGCCTTTACATGTACAAGAACGTTTACAGCTTGATTCCGAAGTCGGTTTCGCGCCTGGCGCGGTTGAAAACGCTCAAGTTCTTCGGGAACGAGATTAACCTCTTCGCTCCCGAGTTCGGGAACTTGACGGCGTTGGAGTGTTTGCAGATGAAGATTTCCTCGCCTGGGATTGGAGGCTTGCCGTTGCACATGCTCCAGGGTTTGAAGGAACTCGAACTTTCCAAAGGCCCTCCCAGACCCTCGGCTTTTCCGATTTTGACAGAAATTTCGGGTCTCAAGTGCTTGACCAAGCTTTCCATTTGTCATTTCTCTATACGATACCTTCCTCCCGAAATTGGATGCTTGAAGAAGCTGGAGTATCTTGATCTTTCGTTCAATAAAATTAAGACGTTGCCGTCGGAGATTAGTTATTTGCAGGGCTTGATATCCATGAAAGTTGCGAATAATAAGTTAGTGGAACTGCCGTCAGCTATGTCTTCTCTGTCAAGGTTGGAGAGTTTGGACCTGTCGAATAATAGGTTGACTTCGCTGGGGTCCCTTGAACTTGCCTCCATGGATAGACTTCAGAAGTTAAACCTTCAGTACAACAAGCTGCTCGCGAATTTTCAAATTCCTTCATGGATATATTGTAATATGGAGGGAAATGATGGAGCTAGATGCAAAGATGATTGTAGCAGTTCTTCTGTTGAAATGGATCTCTATGAAAACAGCTTTCATGAGAATGATGAAACCCTTTCTGACAACAGCCCTCATAATATCATTTCAAGCATGGTAACAAGCTCCTCATCTAGCAGATGTTTTGCATCCCGGAAGTCAGGTAAACGGTGGAAACGGCGACATTATTTACAGCAGAAAGCTCGTCAAGAACGCTTGAACAACAGTAGGAAGTGGAAAGCTGTAGATCATGACCAGTTGATGAGCAAGAAGATTCACCGAATTTCTGAAGCAGGAAATCAAGATAGTCTTGCTTCTGAAAGTTGTGGAGAAATTGTATCAGAGAATGAGAACCTGGACGATAGTAATAAAAGAATATTCTCTGAACAAGCAGTAAATGATGATGTAATTGATAATGTTAACAATGACGAAGTAATTATTGAAAAGCACTTTTCTCGGGAAGATTGCTGCTCTACTGAAAGCAAAGATGAAAAAGATGCAACGCTATGCTCCTTAGAGGACAGGCAAAGTGATCAGGATGAAACATCTTGTACAGAACTTTTGAAGTGTGTTTCTAAATCAAAGAGACATTTAGATCGGGATCTTGATAATCCTAAACCATGCAAGTCTAGAAAATCAATTAGTGCTTCGATATTGTCTTGCAAGTACAGCAAAATGTCTTTTTGTGGAATTGAAGACCATCTATCCGATGGATTTTATGATGCAGGACGAGATCGGCCATTTATGCCTCTGGAGAGTTATGAGCAAATTCAGTGTCTTGCTTCTCGTGAAGTTATCCTTCTAGACAGAAAAAAAGATGAAGAGTTGGATGCTGTTATGCTAGCTGCTCTGGCACTGGTCTATAATTTGAAACAGTTAAACGGTTTAAACAGACCTGGGAACCAGGCTGTTGTTGATAACTTGCAGTTACAGACAGCATCACTGCTCGCACTCTTTGTATCAGATCATTTTGGTGGCAGTGATAGAGGTGCTATTGTAGATAGGACACGAAAATCTGTGTCTGGTTCAAACTATAGCAAGCCTTTTGTCTGTACATGCTCAACTGGAAGCAGCACCAGTATAAGTGCTTCAACCAAACCTGTTGTAAACACCACAGAAGATATCACTCTTGCTAAGATGTCTGAAAAATCTCTTCACTCTATAAAAAAAAGGCGAAATTCAATCATAGTTCCTCTTGGCTCTGTGCAGTATGGTGTATGTAGACATAGAGCTCTGCTTTTTAAGTATTTATGTGATCACATGGAGCCTCCAATTCCTTGTGAGCTTGTCAGGGGTTACCTGGATTTTTCACCACATGCCTGGAATATCATTCTGATTAAGAGGGGTGCAACATGGGTTCGAATGCTGATTGATGCTTGTCGACCTCATGATATAAGAGAAGAGAAGGATCCCGAATACTTTTGTAGGTACATACCTCTCAATCGAACCACAATCCCCCTTTCATCTGGAGGAAGTCCAGGTCCTGATCATTCTTTCCTATCTCTAACCACTTGTGATGAACTCGAGACAAAAGCTTCAACTACTTTAGTTAAATGCAAATTTGGATCAGTGGAGGCTGCAGCAAAGGTGCGCACTTTGGAAGAGCAAGGGAGTTTGGCAGAGAAAATTAAAAATTTTGAATATAACTGTTTGGGAGAAATTAGAATTCTTGCTGCTTTAAAACACCCCTGCATTGTGGAAATGTATGGACACCAAATATCATGTCAATGGTCTATCTCAGCTGATGGTAATCCTGAGCACCGCGTATTAAGATCTGCAATTTTTATGGAGTATGTGGAAGGGGGCTCCTTAAAAAACTATCTGGAGAAGCACTCAAAAGCTGGTGAAAAGCATGTTCCTGTGGAGTTGGCTTTGTATATTGCCAAAGATGTCTCATGTGCTTTGTCAGAGTTGCACTCAAGGCACATAATTCATCGTGACATAAAAAGTGAAAACATTTTGATTGATTTGGATAAGAAGAGAGACGATGGAACTCCTACTGTGAAGCTGTGTGATTTTGATAGTGCAGTGCCACTAAGATCAACTTTACATGCATGTTGTATTGCTCATGTAGGAACGCCTCCTCCTTGTGTATGTGTTGGAACTCCTCGGTGGATGGCTCCAGAGGTTATGCAGACAATGTATGAAAAGAACTCTTATGGATTGGAAGCTGACATTTGGTCGTTTGGATGTTTACTTTTGGAGATGCTGACTCTACAAATTCCATATTCTGGACTTCCTGATTCACACTTCCTTGATAATCTGCAGTTGGGTAAAAGACCACAGTTAACTGATGAGCTGGAGGAGATGAGTTTATTGAATGAACCCACAATGATTCCAACTGCTGAAGAGCTGGAAAAATCAGATGTTGAGGTAGACATGTTGAAATTTCTGGTTGATTTGTTCCATAGGTGCGTGGAAGAAAATCCAAACAAACGTCCTACAGCCGAAGAAATCCATAAAATGCTGCTTGCACACACATGTCGCTTACAAGTTTAA 3333 0.4266 MQLLHSDKPAPERRDSPENPDEPNAAPDSLDSGTDDGAALDVTGKTFEFPAAENADDSVESLYMYKNVYSLIPKSVSRLARLKTLKFFGNEINLFAPEFGNLTALECLQMKISSPGIGGLPLHMLQGLKELELSKGPPRPSAFPILTEISGLKCLTKLSICHFSIRYLPPEIGCLKKLEYLDLSFNKIKTLPSEISYLQGLISMKVANNKLVELPSAMSSLSRLESLDLSNNRLTSLGSLELASMDRLQKLNLQYNKLLANFQIPSWIYCNMEGNDGARCKDDCSSSSVEMDLYENSFHENDETLSDNSPHNIISSMVTSSSSSRCFASRKSGKRWKRRHYLQQKARQERLNNSRKWKAVDHDQLMSKKIHRISEAGNQDSLASESCGEIVSENENLDDSNKRIFSEQAVNDDVIDNVNNDEVIIEKHFSREDCCSTESKDEKDATLCSLEDRQSDQDETSCTELLKCVSKSKRHLDRDLDNPKPCKSRKSISASILSCKYSKMSFCGIEDHLSDGFYDAGRDRPFMPLESYEQIQCLASREVILLDRKKDEELDAVMLAALALVYNLKQLNGLNRPGNQAVVDNLQLQTASLLALFVSDHFGGSDRGAIVDRTRKSVSGSNYSKPFVCTCSTGSSTSISASTKPVVNTTEDITLAKMSEKSLHSIKKRRNSIIVPLGSVQYGVCRHRALLFKYLCDHMEPPIPCELVRGYLDFSPHAWNIILIKRGATWVRMLIDACRPHDIREEKDPEYFCRYIPLNRTTIPLSSGGSPGPDHSFLSLTTCDELETKASTTLVKCKFGSVEAAAKVRTLEEQGSLAEKIKNFEYNCLGEIRILAALKHPCIVEMYGHQISCQWSISADGNPEHRVLRSAIFMEYVEGGSLKNYLEKHSKAGEKHVPVELALYIAKDVSCALSELHSRHIIHRDIKSENILIDLDKKRDDGTPTVKLCDFDSAVPLRSTLHACCIAHVGTPPPCVCVGTPRWMAPEVMQTMYEKNSYGLEADIWSFGCLLLEMLTLQIPYSGLPDSHFLDNLQLGKRPQLTDELEEMSLLNEPTMIPTAEELEKSDVEVDMLKFLVDLFHRCVEENPNKRPTAEEIHKMLLAHTCRLQV 1110
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca02g02335 1110 Pfam Protein kinase domain 820 1099 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca02g02335 1110 ProSiteProfiles Leucine-rich repeat profile. 177 198 IPR001611 GO:0005515
Cca02g02335 1110 PANTHER SERINE/THREONINE-PROTEIN KINASE SBK1 60 1105 - -
Cca02g02335 1110 MobiDBLite consensus disorder prediction 1 37 - -
Cca02g02335 1110 Gene3D Ribonuclease Inhibitor 47 288 IPR032675 -
Cca02g02335 1110 ProSitePatterns Serine/Threonine protein kinases active-site signature. 921 933 IPR008271 GO:0004672|GO:0006468
Cca02g02335 1110 SUPERFAMILY Protein kinase-like (PK-like) 796 1101 IPR011009 -
Cca02g02335 1110 Pfam Leucine rich repeat 203 258 IPR001611 GO:0005515
Cca02g02335 1110 Pfam Ethylene-responsive protein kinase Le-CTR1 653 726 - -
Cca02g02335 1110 ProSiteProfiles Protein kinase domain profile. 788 1101 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca02g02335 1110 PANTHER BNAC08G43810D PROTEIN 60 1105 - -
Cca02g02335 1110 SMART LRR_sd22_2 175 200 - -
Cca02g02335 1110 SMART LRR_sd22_2 221 242 - -
Cca02g02335 1110 MobiDBLite consensus disorder prediction 1 21 - -
Cca02g02335 1110 Gene3D Transferase(Phosphotransferase) domain 1 776 1108 - -
Cca02g02335 1110 PRINTS Leucine-rich repeat signature 178 191 - -
Cca02g02335 1110 PRINTS Leucine-rich repeat signature 221 234 - -
Cca02g02335 1110 SMART serkin_6 780 1103 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca02g02335 1110 SMART LRR_typ_2 245 271 IPR003591 -
Cca02g02335 1110 SMART LRR_typ_2 221 244 IPR003591 -
Cca02g02335 1110 SMART LRR_typ_2 79 101 IPR003591 -
Cca02g02335 1110 SMART LRR_typ_2 175 198 IPR003591 -
Cca02g02335 1110 SUPERFAMILY RNI-like 59 271 - -
Cca02g02335 1110 ProSiteProfiles Leucine-rich repeat profile. 223 244 IPR001611 GO:0005515
Cca02g02335 1110 SMART LRR_bac_2 175 194 - -
Cca02g02335 1110 SMART LRR_bac_2 198 217 - -
Cca02g02335 1110 SMART LRR_bac_2 221 240 - -
Cca02g02335 1110 SUPERFAMILY Cysteine proteinases 681 739 IPR038765 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca02g02335 Cca-Chr2 44155177 44163802 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca02g02335 808 1103 MAP Kinase Kinase Kinase AT2G24360 28.378 7.94e-24 103
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TKL-Pl-2 Cca02g02335 Pkinase 4.3e-41 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca02g02335 - - gmx:100819959 1892.47