Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca02g02332 ATGGCCTCTAAAAACGAATGCGAGAATTCAACCGATAATTCTCCATCATCGCCAAAGAACATATACAAAGATCCAGATGATGGGCGGCAACGGTTTTTGCTTGAACTGGAGTTTGTTCAGTGCCTTGCCAATCCTACCTACATCCACTATTTGGCACAGAATCGATATTTTGAGGACGAAGCATTCATTGGATACTTGAAGTATCTTCAATATTGGCAACGTCCTGAATATATAAAATTTATTATGTATCCTCACTGCCTGTATTTTCTTGAGCTGCTTCAGAATGCAAATTTCCGCAACGCAATGGCACATCCTACCAATAAGGAACTGGCACATAGACAACAATTCTACTTCTGGAAGAACTATAGGAACAATCGGCTAAAACATATTTTACCAAGATCACTTCCTGAACCTAGTGCCACACCTGCACTTCCTGCTCCTGCTTCAACTCCGGCTCAGGCACCTGTGTCTGCACTACCACCAGTACCTGCAACAAGTGTTGCTGTGACAGCAACACCTACTCAAGCTCCTTCTCCCATGCCTTATGGTTTGCCAAAAAATGACATGAGGAATCCTACTATTGATAATAGAAGGAAGAGAAAGTGA 606 0.4241 MASKNECENSTDNSPSSPKNIYKDPDDGRQRFLLELEFVQCLANPTYIHYLAQNRYFEDEAFIGYLKYLQYWQRPEYIKFIMYPHCLYFLELLQNANFRNAMAHPTNKELAHRQQFYFWKNYRNNRLKHILPRSLPEPSATPALPAPASTPAQAPVSALPPVPATSVAVTATPTQAPSPMPYGLPKNDMRNPTIDNRRKRK 201
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca02g02332 201 PANTHER MEDIATOR OF RNA POLYMERASE II TRANSCRIPTION SUBUNIT 31 1 201 IPR008831 GO:0003712|GO:0006355|GO:0016592
Cca02g02332 201 MobiDBLite consensus disorder prediction 139 158 - -
Cca02g02332 201 MobiDBLite consensus disorder prediction 139 201 - -
Cca02g02332 201 MobiDBLite consensus disorder prediction 1 20 - -
Cca02g02332 201 PANTHER MEDIATOR OF RNA POLYMERASE II TRANSCRIPTION SUBUNIT 31 1 201 - -
Cca02g02332 201 MobiDBLite consensus disorder prediction 1 22 - -
Cca02g02332 201 Pfam SOH1 30 122 IPR008831 GO:0003712|GO:0006355|GO:0016592
Cca02g02332 201 Gene3D Mediator of RNA polymerase II, submodule Med31 (Soh1) 17 119 IPR038089 -
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SOH1 Cca02g02332 Med31 1.6e-35 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca02g02332 K15153 - gmx:100527879 329.331
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca02g02332 02 44091691 44094341 Cca02g02332 02 44091691 44094341 ECH