Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca02g02330 ATGGAAGATAATGGCTTGGTGCCGTTGTTTTATGTTGCTCACCACAAGTGGAAGTTTGTCATGTCTCCTTTGCTGCTCATGCTTTTTCTTCTCTCTCCACTTGCTTCCCCCTTCAGTACCGAAGAAGGAAAGGCATTAATGGCGATGAAGGCTTCCTTCAGCAATATTGCAGACGTTCTTCTTGACTGGGATGACGTGCACAATGACGACTTCTGCTCTTGGCGTGGAGTTTTTTGTGATAATGTCAGCCTTACTGTAGTTTCTCTGAACCTGTCTAGTTTGAACCTAGGTGGGGAGATATCACCAGCAATTGGTGACTTGGGGAACCTGCAATCCATAGACCTCCAAGGGAATAAACTAACTGGTCAAATCCCAGATGAAATTGGAAACTGTGCAGCGCTTGCTCATCTGGATTTGTCTGATAATCAGCTTTACGGTGATATTCCTTTCTCCTTGTCCAAGCTGAAGCAACTTGAGTTTTTGAATTTAAAGAGTAATCAATTGACTGGTCCTATACCATCAACTTTAACCCAAATTCCAAACCTGAAAACTCTTGATCTTGCTAGAAATAGGCTCACTGGAGAGATACCAAGACTACTCTATTGGAATGAAGTCTTACAGTACCTTGGGTTGCGAGGGAACCTGTTGAGTGGTACTTTGTCCCCTGATATCTGTCAATTAACGGGTTTGTGGTATTTTGATGTGAGAGGCAACAATTTGACTGGTACCATACCTGACAGCATTGGGAACTGCACAAGTTTTGAAATCTTGGACATATCATATAATCAGATAACAGGGGAGATTCCTTATAATATTGGATTTCTTCAAGTCGCTACTTTGTCACTTCAAGGAAATAGACTAACTGGGAGGATTCCAGAATTTTCTAGAAGGATTGAAAGAAGCTTTTGGGTGAGCGAAGGAAAATGGGAGTTTTCCCCCATTTGGGAAGATGAGAATGAACTGTCACAAATGAATCCATCTCATTTCTTCATTGGAAATCCTTTCTTATGTGGAAATTGGTTTGGATCAATCTGTGGTCCTTCTGTGCCAAAATCAAGAGAGATTTTTTCAAGAGTTGCTGTTGTATGTCTCACACTGGGGATCATGATGTTGTTGGCCATGGTAATTGTTGCATTTTATCGATCCAGCCAGTCAAAACAATTGATGAAAGGATCTAGCCGAACTGGCCAAGGCACGTTGAATGGTCCCCCAAAACTTGTTGTTCTCCATATGGATATGGCTATCCACACTTTGGATGATATAATGAGAAGTACAGAGAATCTCAATGAGAAATACGTCATTGGGTATGGTGCTTCAAGTACTGTATACAAATGTGCTTTGAAGAATTCCCGACCAATTGCAATTAAGCGACTGTACAACCAACAACCACACAATTTTAGGGAGTTTGAGACAGAACTTGAAACTATTGGCAACATTCGACACCGAAACCTTGTCACCTTGCATGGATATGCTCTTACACCCAATGGGAATCTCCTTTTCTATGATTATATGGCGAATGGCTCCTTGTGGGATCTTCTACACGGGCCGTTGAAGGTAAAACTTGATTGGGAGACACGTCTGAGAATTGCTGTCGGAGCAGCTGAAGGACTTGCTTATCTCCATCATGACTGCAACCCACGAATTGTTCACAGGGACATAAAGTCTTCGAATATTCTGCTGGATGAAAACTTTGAAGCTCATCTCTCTGATTTTGGCACTGCTAAATGTATCTCAACCACAAGAACTCACGCATCGACCTATGTCCTTGGAACTATAGGCTATATTGACCCTGAGTATGCCCGAACATCTAGGCTGAATGAAAAATCAGATGTTTATAGCTTCGGGATTGTTCTACTGGAGCTACTTACTGGGAAGAAGGCAGTGGACAATGACTCCAACTTGCATCAATTGATATTATCCAAGGCAGATAACAATACTGTAATGGAGGCTGTGGATCCAGAGGTGTCTGTAACGTGCATTGATCTGTCACACGTTAAGAAGACCTTTCAGCTTGCTTTGCTTTGCACTAAAGGGAACCCCTCTGAGAGGCCTACTATGCATGAAGTAGTCAGGGTGCTGGTATCCCTACTTCCTTCACCTCCAAGTAAAATCCTTGCCCCACCTGCAAAGAAATTCGACTATGCGCATTATGTGATTGAGAAGGGACAACAACGAAAAGAGGAAGCAAGACAACCTCAGGAGGACAACAATTCATCCAATGCTCAATGGTTTGTTCGATTTGGGGATGTTATATCCAAGAGTACTTAA 2268 0.4237 MEDNGLVPLFYVAHHKWKFVMSPLLLMLFLLSPLASPFSTEEGKALMAMKASFSNIADVLLDWDDVHNDDFCSWRGVFCDNVSLTVVSLNLSSLNLGGEISPAIGDLGNLQSIDLQGNKLTGQIPDEIGNCAALAHLDLSDNQLYGDIPFSLSKLKQLEFLNLKSNQLTGPIPSTLTQIPNLKTLDLARNRLTGEIPRLLYWNEVLQYLGLRGNLLSGTLSPDICQLTGLWYFDVRGNNLTGTIPDSIGNCTSFEILDISYNQITGEIPYNIGFLQVATLSLQGNRLTGRIPEFSRRIERSFWVSEGKWEFSPIWEDENELSQMNPSHFFIGNPFLCGNWFGSICGPSVPKSREIFSRVAVVCLTLGIMMLLAMVIVAFYRSSQSKQLMKGSSRTGQGTLNGPPKLVVLHMDMAIHTLDDIMRSTENLNEKYVIGYGASSTVYKCALKNSRPIAIKRLYNQQPHNFREFETELETIGNIRHRNLVTLHGYALTPNGNLLFYDYMANGSLWDLLHGPLKVKLDWETRLRIAVGAAEGLAYLHHDCNPRIVHRDIKSSNILLDENFEAHLSDFGTAKCISTTRTHASTYVLGTIGYIDPEYARTSRLNEKSDVYSFGIVLLELLTGKKAVDNDSNLHQLILSKADNNTVMEAVDPEVSVTCIDLSHVKKTFQLALLCTKGNPSERPTMHEVVRVLVSLLPSPPSKILAPPAKKFDYAHYVIEKGQQRKEEARQPQEDNNSSNAQWFVRFGDVISKST 755
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca02g02330 755 ProSitePatterns Protein kinases ATP-binding region signature. 434 456 IPR017441 GO:0005524
Cca02g02330 755 SUPERFAMILY L domain-like 40 296 - -
Cca02g02330 755 SMART LRR_typ_2 155 178 IPR003591 -
Cca02g02330 755 SMART LRR_typ_2 227 251 IPR003591 -
Cca02g02330 755 SMART LRR_typ_2 179 203 IPR003591 -
Cca02g02330 755 SMART LRR_typ_2 107 131 IPR003591 -
Cca02g02330 755 Pfam Protein kinase domain 430 691 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca02g02330 755 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 32 293 - -
Cca02g02330 755 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 318 732 - -
Cca02g02330 755 ProSitePatterns Serine/Threonine protein kinases active-site signature. 548 560 IPR008271 GO:0004672|GO:0006468
Cca02g02330 755 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE ERL1-RELATED 318 732 - -
Cca02g02330 755 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE ERL1-RELATED 32 293 - -
Cca02g02330 755 SMART serkin_6 428 694 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca02g02330 755 SUPERFAMILY Protein kinase-like (PK-like) 407 693 IPR011009 -
Cca02g02330 755 ProSiteProfiles Leucine-rich repeat profile. 181 203 IPR001611 GO:0005515
Cca02g02330 755 Gene3D Transferase(Phosphotransferase) domain 1 504 702 - -
Cca02g02330 755 Pfam Leucine rich repeat 109 168 IPR001611 GO:0005515
Cca02g02330 755 Pfam Leucine rich repeat N-terminal domain 41 80 IPR013210 -
Cca02g02330 755 Gene3D Phosphorylase Kinase; domain 1 400 503 - -
Cca02g02330 755 ProSiteProfiles Protein kinase domain profile. 428 697 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca02g02330 755 Gene3D Ribonuclease Inhibitor 204 346 IPR032675 -
Cca02g02330 755 Gene3D Ribonuclease Inhibitor 39 203 IPR032675 -
Cca02g02330 755 Pfam Leucine Rich repeat 180 195 IPR001611 GO:0005515
Cca02g02330 755 Pfam Leucine Rich repeat 250 267 IPR001611 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca02g02330 Cca-Chr2 44079121 44086174 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca02g02330 89 755 Receptor kinase-like Gene Family AT5G62230 57.576 0.0 739
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XIIIb Cca02g02330 Pkinase 6.1e-43 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca02g02330 K20718 - gmx:100499643 877.856
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca02g02330 02 44079121 44086174 Cca02g02330 02 44079121 44086174 ECH