Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca02g02325 ATGCCTTCTCTTTCTCTAATTCATACTGACAATAAGAACCGCTCCTCCGAGAAAACCAACAACCAATCCCTAACCGATCCCATTATTGCCAAGAAAGCCTCCAAACACAACCCCCCCGATCCCGGCAGCGATGGGGTTTCGGGGAAGCCGAAGAAGACGAAGAAGCGCAAGGCTTCAGATATAGAGGCCATGCCCATGGCGACCAACGATGGGGACGACGAGACTGGTTCCGAGCTGGTCGAGCCCGAAGCTTCCAGAGAGGATCACaagaagaagaaaaagaagaaaaagCCCAAGCCCGAAGACCCTCCACCCATGCAACCGGAGGACCCCAACGCCGTTTCCAACTTCAGAATTTCCGACCCCTTGAGGGCCAAGTTGAAGGACAAGGGTATCGAATCGCTCTTTCCCATTCAGGCCATGACCTTCGACACCGTTCTTGACGGTTCTGATTTGGTTGGTCGGGCTCGCACCGGTCAGGGTAAAACTCTGGCATTTGTGTTGCCCATATTGGAGTCTTTAACAAATGGTCCGGCAAAAGCATCCAGAAAGACTGGCTACGGGAGGACACCAAGCGTTCTTGTGCTTCTACCTACTAGGGAATTGGCTTGTCAGGTGCATGCTGATTTTGATGTTTATGGTGGGGCGATGGGATTGAGCTCTTGTTGTTTATATGGCGGAGCTCCATATCAAGCTCAAGAAATTAAGCTCAAGAGAGGTGTTGATATTGTAATTGGCACACCTGGTCGCGTGAAGGATCATATAGAGAGGGGAAATATTGACCTGAGCCAATTAAAATTTCGTGTCCTTGATGAAGCAGATGAAATGCTGAGGATGGGTTTTGTTGAAGATGTGGAACTGATTCTAGGTAAGGTAGAAAATGTTAATAAAGTTCAGACACTTCTTTTCAGTGCTACTTTACCGGACTGGGTTAAGCATATTGCCGCAAAATTTCTGAAGCCAGATAAGAAAACTGCTGATCTGGTTGGAAATACAAAAATGAAGGCTAGTACCAATGTTAGGCATATTGTTCTTCCTTGCACTGGTTCTGCCAGGTCCCAACTTATCCCGGACATTATTCGCTGTTATAGCAGTGGGGGCCGGACAATTATATTTACCGAGACAAAGGAGTCTGCTTCTCAGCTTGCAGGGACGTTGCCTGGAGCTAGAGCTCTCCATGGTGATATACAGCAAGCACAACGTGAGGTTACTCTGTCTGGCTTTAGGTCTGGGAAATTCATGACATTAGTTGCCACAAATGTGGCAGCTCGTGGTCTTGATATTAATGATGTTCAGTTAATTATCCAGTGTGAACCCCCACGTGATGTAGAAGCCTATATCCATCGTTCTGGGCGCACAGGAAGAGCAGGTAATACTGGTGTTGCTGTTATGCTTTATGATCCAAAAAGATCGAATATATCTAAAATAGAAAGAGAATCCGGTGTAAAATTTGAACACATATCTGCCCCTCAGCCTGATGATATTGCCAAAGCTGTTGGTGGGGAAGCAGCTGAAATGATTATCCAAGTGTCTGATAGTGTGATTCCTGCATTCAAGTCTGCTGCTGAAGACCTTTTGAACAGTTCTGGTTTATCAGTCGTTGAATTACTTGCCAAGGCCCTGGCCAAGGCTGTTGGTTATACCGAAATAAAGCAAAGATCACTTCTCACTTCTATGGAGAACTATGTTACATTACTTCTTGAGATTGGAAGACCAATCTTCACCCCATCTTTTGCCTACGGAGTCTTGAGGAGATTCTTGCCTGAAGAGAAGGTTGAGGCTGTGAAAGGTCTTTCACTCACTGCCGATGGAAATGGTGTTGTTTTTGATGTACCAGCTGAAGATTTAGATACATATCTTTCTGGTCAAGAAAATGCCTCGAATGTAAGTTTAGAGGTGTTGAAAGCATTGCCACGTTTGCAACAGAGAGAGCAGCAATCAAGAGGTGGAAGATTTGGTGATGGTGGTGGCCGAGGTAACAGGTTTTCAGGTGGAAGAGGTGGAGGAGGAAGAAACGGTAGATTTTCAAATGATAGGTTCTCCAATGGTGGTGGGAGAGGTCGTGGCAACTGGGGTGGAAAGAGATGGTGA 2091 0.4582 MPSLSLIHTDNKNRSSEKTNNQSLTDPIIAKKASKHNPPDPGSDGVSGKPKKTKKRKASDIEAMPMATNDGDDETGSELVEPEASREDHKKKKKKKKPKPEDPPPMQPEDPNAVSNFRISDPLRAKLKDKGIESLFPIQAMTFDTVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPAKASRKTGYGRTPSVLVLLPTRELACQVHADFDVYGGAMGLSSCCLYGGAPYQAQEIKLKRGVDIVIGTPGRVKDHIERGNIDLSQLKFRVLDEADEMLRMGFVEDVELILGKVENVNKVQTLLFSATLPDWVKHIAAKFLKPDKKTADLVGNTKMKASTNVRHIVLPCTGSARSQLIPDIIRCYSSGGRTIIFTETKESASQLAGTLPGARALHGDIQQAQREVTLSGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYDPKRSNISKIERESGVKFEHISAPQPDDIAKAVGGEAAEMIIQVSDSVIPAFKSAAEDLLNSSGLSVVELLAKALAKAVGYTEIKQRSLLTSMENYVTLLLEIGRPIFTPSFAYGVLRRFLPEEKVEAVKGLSLTADGNGVVFDVPAEDLDTYLSGQENASNVSLEVLKALPRLQQREQQSRGGRFGDGGGRGNRFSGGRGGGGRNGRFSNDRFSNGGGRGRGNWGGKRW 696
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca02g02325 696 MobiDBLite consensus disorder prediction 1 116 - -
Cca02g02325 696 Pfam GUCT (NUC152) domain 546 641 IPR012562 GO:0003723|GO:0004386|GO:0005524
Cca02g02325 696 SUPERFAMILY RNA-binding domain, RBD 550 633 IPR035979 GO:0003676
Cca02g02325 696 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 29 675 - -
Cca02g02325 696 MobiDBLite consensus disorder prediction 640 696 - -
Cca02g02325 696 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 354 496 IPR001650 -
Cca02g02325 696 CDD DEADc 123 320 - -
Cca02g02325 696 CDD SF2_C_DEAD 340 466 - -
Cca02g02325 696 MobiDBLite consensus disorder prediction 1 28 - -
Cca02g02325 696 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 269 277 IPR000629 -
Cca02g02325 696 Gene3D - 339 562 IPR027417 -
Cca02g02325 696 Gene3D - 59 325 IPR027417 -
Cca02g02325 696 Pfam DEAD/DEAH box helicase 136 313 IPR011545 GO:0003676|GO:0005524
Cca02g02325 696 CDD GUCT_RH7_like 553 638 - -
Cca02g02325 696 SMART helicmild6 380 457 IPR001650 -
Cca02g02325 696 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 143 325 IPR014001 -
Cca02g02325 696 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE 7 29 675 - -
Cca02g02325 696 Pfam Helicase conserved C-terminal domain 359 457 IPR001650 -
Cca02g02325 696 Gene3D - 563 635 - -
Cca02g02325 696 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 191 469 IPR027417 -
Cca02g02325 696 SMART ultradead3 131 343 IPR014001 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca02g02325 Cca-Chr2 43996047 44001628 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca02g02325 149 493 Eukaryotic Initiation Factors Gene Family AT1G72730 30.286 4.59e-39 147
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca02g02325 K16911 - gmx:100820207 1031.55
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca02g02325 02 43996047 44001628 Cca02g02325 02 43996047 44001628 ECH