Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca02g02322 ATGCCATCTCGACAACTAGCGACGTCAGGTGGAGGTTGGAAGAAGCAGGGTGGTCTGTTAGGTTCCACTTCCAGCGCCTTGGCCTGCTCTTTCTTCCTCTTAATCTTGCTCTGCCTCCGCAAGAGAAAGCGCACCACTCCCTCCTCCGACGCCGACTCTAACCCTCCTCATCCCTACCCATACCCGCTCCTCCGCCGGGCCACCAACTCCTTCTCCACGCGGCTGGGCCAGGGCGGCTTCGGCCCCGTCTTCTCCGGCACCCTGGGCGGGCAGCCCGTGGCCGTCAAGCTGATGGACTCGGCCTCCCTCCAGGGCGAGCGCGAGTTCCACAACGAGCTCCTCTTGGCCTCCCGCCTCCGCTCCCCCCTGGTGCTCCCCGCCATCGGCTTCTCCTCCGACCCCAAACGCCGCCGCTTCCTCCTCGTCTACCAGCTCATGCCCAACGGCAACCTCCACGACGCCCTCCTCCGCCGCAGATCCCCCCACCTCACCCCCTGGAAAAACCGCTTCCACATCATCCTCCACGTCGCACGTGCCATCCACTACCTCCACTCCCTCCAGCCCCCCGTCATCCACGGCGACATCAAACCCTCCAACATTCTCCTCGACCACTCCTTCTCCGCCAAGCTCGCCGACTTCGGCCTCGCTCGCTTCAAAACCCACACCCTTCATCCAAATAAGGATGAATCCGAGAGCGACGCCCCCTCCGAGTCCGACTTTGAAACTCAGAGCGTCAACACCGACCAATCATTCGATGACACCGCCAAAGGGGACTATGTGAGGGATTGGATTGCATCCAGTAGTGGAACCGTGGAGAAGAAGAAAAGTAGGAGGAAACTGGGATGGTGGGAATCCATGGAGGGTCATGGTTTGAAGAAGGACAAGAGGAGGCCGGCGAGGGAATGGTGGAAGGAGGAGTATTCAGAAGAGCTTGCCaagaagaagaagaagaagaagaaaaagGGTGATATGGATAATGAAGAGGATGTAGGCGTATACAAGAACCGTAGTGGTGTGGAATCGTGGTTGAGCGGAGAGCGGTGGAATAGTTACGAGTCGGCGGAGATGGCAGGAAAgagtgggggtgtgagtagcagtcggagtatgaggggaACGATTTTGTACGTGGCACCTGAGTGTGGGTACAGTGGGGAGGTGTCGGAGAAGAGTGACGTGTACAGTTTGGGGGTTTTGTTGCTTGTGATTGTTTCGGGGAGGCGTCCGCTGCAGGTGACGGGGTCTCCGATATCGGAGTTTAGGCGTGCGAATCTGGTGTCTTGGGCGAAACAGTGTGCGAGGAAAGGGAAGGTTCTGGAAGTGGTGGATGAGAGTGTGGAGGGGTTGGATAAAGAGCAGGCCATTCTGTGCGTGACGGTTGCGCTCATGTGTTTGCTCAACTCACCTGCTCGTCGCCCTTCCATGGAGGAGGTTCTGGGAATGCTCACTCGCCACATCCAGACACCGCCACAGGAACATGGTTCACAAACAATTTCCATGTCCAATTATTCCCAACAAAGGCGCACATCATCACAACGGATACAATTTTAG 1548 0.5549 MPSRQLATSGGGWKKQGGLLGSTSSALACSFFLLILLCLRKRKRTTPSSDADSNPPHPYPYPLLRRATNSFSTRLGQGGFGPVFSGTLGGQPVAVKLMDSASLQGEREFHNELLLASRLRSPLVLPAIGFSSDPKRRRFLLVYQLMPNGNLHDALLRRRSPHLTPWKNRFHIILHVARAIHYLHSLQPPVIHGDIKPSNILLDHSFSAKLADFGLARFKTHTLHPNKDESESDAPSESDFETQSVNTDQSFDDTAKGDYVRDWIASSSGTVEKKKSRRKLGWWESMEGHGLKKDKRRPAREWWKEEYSEELAKKKKKKKKKGDMDNEEDVGVYKNRSGVESWLSGERWNSYESAEMAGKSGGVSSSRSMRGTILYVAPECGYSGEVSEKSDVYSLGVLLLVIVSGRRPLQVTGSPISEFRRANLVSWAKQCARKGKVLEVVDESVEGLDKEQAILCVTVALMCLLNSPARRPSMEEVLGMLTRHIQTPPQEHGSQTISMSNYSQQRRTSSQRIQF 515
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca02g02322 515 ProSiteProfiles Protein kinase domain profile. 69 487 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca02g02322 515 MobiDBLite consensus disorder prediction 224 253 - -
Cca02g02322 515 PANTHER RECEPTOR-LIKE SERINE/THREONINE-KINASE PLANT 265 490 - -
Cca02g02322 515 PANTHER RECEPTOR-LIKE SERINE/THREONINE-KINASE PLANT 1 265 - -
Cca02g02322 515 Pfam Protein kinase domain 73 220 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca02g02322 515 SUPERFAMILY Protein kinase-like (PK-like) 46 481 IPR011009 -
Cca02g02322 515 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 29 - -
Cca02g02322 515 Gene3D Transferase(Phosphotransferase) domain 1 57 243 - -
Cca02g02322 515 Gene3D Transferase(Phosphotransferase) domain 1 349 507 - -
Cca02g02322 515 PANTHER OS07G0586332 PROTEIN 1 265 IPR044576 -
Cca02g02322 515 PANTHER OS07G0586332 PROTEIN 265 490 IPR044576 -
Cca02g02322 515 MobiDBLite consensus disorder prediction 237 253 - -
Cca02g02322 515 Pfam Protein tyrosine and serine/threonine kinase 365 478 IPR001245 GO:0004672|GO:0006468
Cca02g02322 515 MobiDBLite consensus disorder prediction 486 515 - -
Cca02g02322 515 ProSitePatterns Serine/Threonine protein kinases active-site signature. 190 202 IPR008271 GO:0004672|GO:0006468
Cca02g02322 515 SMART serkin_6 69 481 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca02g02322 515 MobiDBLite consensus disorder prediction 487 515 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca02g02322 Cca-Chr2 43960482 43962305 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca02g02322 359 482 Receptor kinase-like Gene Family AT3G58690 37.209 3.90e-14 72.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-XI Cca02g02322 Pkinase 4.5e-24 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca02g02322 - - ccaj:109790389 933.324
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca02g02322 02 43960482 43962305 Cca02g02322 02 43960482 43962305 ECH
Cca08g00547 08 8870683 8873266 Cca02g02322 02 43960482 43962305 PCT