Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca02g02321 ATGTTTCCTTTACAACGAGGCAATGAGCTGGTGATCCAGTTTTCTAATGGTCTCCACCAGCAGCACAAAATCTCCCAAGATCTGATTCTGGATGATCACGTTTCCGATAAAAAATTGCCTACAAGCCGCCCAAACAAACTATTTTATGAGCCCGGCCACGCTAATTCTAACGAATATACAAAAAAGATGGTTCACAGAGAGATTGAAAGACAAAGGAGGCAAGAAATGGCTACCCTTCATGCCTCTCTTAGATCCCTCCTGCCTCTTGACTTCATCAAGGGAAAGCGTTCCAAATCTGATCAAATGAACCAGGCAGTGAATTACATAAACCACCTGCAGAAGAATATTAAAGAATTGAGTGACAAGAGGGATGGACTGAAGAGGAAACTCTCCATAAATCAAAGCCTCGAAAGCCACCATGAGACCAAGCATGCTTCTGGAGGTTTCACTGTTCACCAGAATAGTGGAGGCGGAGCTGTGGGGATTGAAATAAGTGGATTCGGTGAGGAAGGATTCTCACTTTCTAAATTGCTTCAACTGCTGTTAGAAGAACGACTTGAAGTTGTTAGTTGTCTTTCAACTCAAGTCAATGGCAGATTACTCCACAGTGTGCAGTGTGAGGTTGACAATTCCGACAGTGTAGATCTATCTGAGCTGAGAAGGAAATTTTCTGAGTAA 678 0.4292 MFPLQRGNELVIQFSNGLHQQHKISQDLILDDHVSDKKLPTSRPNKLFYEPGHANSNEYTKKMVHREIERQRRQEMATLHASLRSLLPLDFIKGKRSKSDQMNQAVNYINHLQKNIKELSDKRDGLKRKLSINQSLESHHETKHASGGFTVHQNSGGGAVGIEISGFGEEGFSLSKLLQLLLEERLEVVSCLSTQVNGRLLHSVQCEVDNSDSVDLSELRRKFSE 225
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca02g02321 225 Gene3D - 51 144 IPR036638 GO:0046983
Cca02g02321 225 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 58 136 IPR036638 GO:0046983
Cca02g02321 225 SMART finulus 66 118 IPR011598 GO:0046983
Cca02g02321 225 CDD bHLH_AtORG2_like 61 137 - -
Cca02g02321 225 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 60 112 IPR011598 GO:0046983
Cca02g02321 225 Coils Coil 102 129 - -
Cca02g02321 225 Pfam Helix-loop-helix DNA-binding domain 61 113 IPR011598 GO:0046983
Cca02g02321 225 PANTHER TRANSCRIPTION FACTOR BHLH FAMILY-RELATED 1 225 - -
Cca02g02321 225 PANTHER ACHAETE-SCUTE TRANSCRIPTION FACTOR-RELATED 1 225 IPR015660 GO:0003700|GO:0006357
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca02g02321 Cca-Chr2 43948012 43949971 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca02g02321 54 225 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G25410 41.667 1.25e-35 124
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Cca02g02321 HLH 1.4e-11 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca02g02321 - - gmx:100775836 322.013
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca02g02321 02 43948012 43949971 Cca02g02321 02 43948012 43949971 ECH
Cca08g00548 08 8904185 8907661 Cca02g02321 02 43948012 43949971 PCT