Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca02g02320 ATGGCCGAAGAGAATCAGCATATAATATTAGCCACTACGAACAATGATGAGAAGAAGATCATTCGCAGGGAAGTTGAAAAACAAAGGAGGACACACATGTCTGTTCTATGTGCATCTCTTCGATCTTCACTCCCTTTAGAACTCATCAAGGGAAAGCGTTCGGCATCAGATCACATAGGCGAAGCTGTAAATTATATTCAAATTTTAAAGCAAAAGATTAATGATCTCCAAGTCAAGAGAGATAGGCTTAAACAGAAGGTTAATTCAAGTTTAGTTGATACTGAAATTGAACCAGATCATTCAGGTGCAGTAGTGAAGTGCGTCAACATCAATCACATTCCAGGGGGCGTGGAAATTTCCATATGTAGTGGATTCGCAGAGAGAAATTCTCCTTTATCAGAGTTAATGGAAATATTGCTTCAAGAAGGATGTGTTGTTGTTAGCTGTGTTTCGACCAATGCTAATGGGAGGATATTTCATACTATTAAGTCTGAGGTGGAGGACTTGACACGCCTTGATCTTGCTAAGCTGCAACACAAACTGGACCATGCAATCTTGTTGTCAAGACAATTATATGCCGGTTGA 585 0.3966 MAEENQHIILATTNNDEKKIIRREVEKQRRTHMSVLCASLRSSLPLELIKGKRSASDHIGEAVNYIQILKQKINDLQVKRDRLKQKVNSSLVDTEIEPDHSGAVVKCVNINHIPGGVEISICSGFAERNSPLSELMEILLQEGCVVVSCVSTNANGRIFHTIKSEVEDLTRLDLAKLQHKLDHAILLSRQLYAG 194
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca02g02320 194 PANTHER ACHAETE-SCUTE TRANSCRIPTION FACTOR-RELATED 5 189 IPR015660 GO:0003700|GO:0006357
Cca02g02320 194 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 15 88 IPR036638 GO:0046983
Cca02g02320 194 Pfam Helix-loop-helix DNA-binding domain 22 69 IPR011598 GO:0046983
Cca02g02320 194 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 17 69 IPR011598 GO:0046983
Cca02g02320 194 PANTHER TRANSCRIPTION FACTOR BHLH FAMILY-RELATED 5 189 - -
Cca02g02320 194 Coils Coil 66 86 - -
Cca02g02320 194 CDD bHLH_AtORG2_like 18 85 - -
Cca02g02320 194 Gene3D - 10 94 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca02g02320 Cca-Chr2 43922480 43924263 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca02g02320 11 181 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G51780 38.983 5.37e-31 110
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Cca02g02320 HLH 4.3e-05 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca02g02320 - - ccaj:109790384 379.793
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca02g02320 02 43922480 43924263 Cca02g02320 02 43922480 43924263 ECH