Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca02g02319 ATGAATCCTTTAGACCCAAGTGATGAGTTGTACTTTCAGATTTCACCTGATGATAATTTTTATTCCCTGCCAATAATCCAAACAGCCCCAGAAAATCAGATCTTGCATGATCCTGTGATAGATGGCAGTGGTCTGACTCAGTGTACAAGTCAAATGGGAATTAAGGACAAGCAGAGAGAAAAATTACCTGCTTGGGGAAGAGAAGATTATAAGATCACCACCACAGATGAAAACAAGAAGTGGATGCACAGAGAGACTGAGAAACAAAGAAGGCAAGAAATGACACGGCTTTGCACCACCTTTAGATCTCTCCTGCCTCTTCAATATATTAAGGGAAAGCGCTCAATTTCTGATCACATGCATGAGGGTACAAATTACATCAAGTACCTTCAAAATAAGGTGAAACAGTTGCAAGCCAAGAGGGATGAGGTTGTGAAGTTGTCTAAATTGTGTCGTGTTGGTTCTGAGAGTGAAAGCTTAACTAGCCATCTTCCAATATGTGTCGTTGTTCATCCTTGTGCTGAAGGTGTTCAGATTAAGTGTAGTTATAGCTTCAGGAAATATGTGTGTCCTTTGTCAAGAGTGCTAAGCGTAGTTCTTAAAGAAGGGCTTGATGTGGTCAACTGTACTTCCACCAAAACAGATGATGACAGGTTCATACACACTGTCCGGTCAGAGGTTCCGCATGGATCTAATTACACTGAACTGCAAAGAAAGCTTATCCAAGCAATATCATCCTCAAGTTTGGAGAGACTGTCTGGAAAACTGCTGATATCATGA 780 0.4103 MNPLDPSDELYFQISPDDNFYSLPIIQTAPENQILHDPVIDGSGLTQCTSQMGIKDKQREKLPAWGREDYKITTTDENKKWMHRETEKQRRQEMTRLCTTFRSLLPLQYIKGKRSISDHMHEGTNYIKYLQNKVKQLQAKRDEVVKLSKLCRVGSESESLTSHLPICVVVHPCAEGVQIKCSYSFRKYVCPLSRVLSVVLKEGLDVVNCTSTKTDDDRFIHTVRSEVPHGSNYTELQRKLIQAISSSSLERLSGKLLIS 259
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca02g02319 259 PANTHER ACHAETE-SCUTE TRANSCRIPTION FACTOR-RELATED 60 252 IPR015660 GO:0003700|GO:0006357
Cca02g02319 259 Pfam Helix-loop-helix DNA-binding domain 80 131 IPR011598 GO:0046983
Cca02g02319 259 Gene3D - 70 159 IPR036638 GO:0046983
Cca02g02319 259 CDD bHLH_AtORG2_like 79 148 - -
Cca02g02319 259 PANTHER TRANSCRIPTION FACTOR 60 252 - -
Cca02g02319 259 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 77 144 IPR036638 GO:0046983
Cca02g02319 259 Coils Coil 127 147 - -
Cca02g02319 259 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 78 130 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca02g02319 Cca-Chr2 43911592 43913147 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca02g02319 73 242 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G51780 40.449 1.57e-34 121
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Cca02g02319 HLH 1.1e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca02g02319 - - gmx:100803786 388.652
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca02g02319 02 43911592 43913147 Cca02g02319 02 43911592 43913147 ECH
Cca08g00549 08 8933775 8935519 Cca02g02319 02 43911592 43913147 PCT