Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca02g02317 ATGACTGCAAAGGCAGATATGGAGTTTGCAGTTGAAGTGGAAGTACTAGGAAGGGTGAGGCACAAGAATTTGTTGGGGTTGCGTGGATTCTATGCAGGAGGCGATGAAAGGTTGATTGTGTATGATTACATGCCTAATCACAGTTTGCTCACCCATTTGCATGGTCAACTTGCCACCGATTGTTTGCTAGATTGGCCTAAAAGAATGAGCATAGCTATTGGAGCAGCTGAAGGCTTAGCGTATTTGCACCATGAGGCAAACCCTCACatcattcatagagacataaaggcaagcaatgttcttttagacgctgaatttgaagccaaggttgctgattttgggtttgctaagttgttaccagagggtgtaagccatctgacgacaagggttaagggcacccttggatatttggcgccagagtacgccatgtgggggaaggtttctgggagctgtgatgtttacagttatgggattttgcttttggagattgtgagtgccaagaaaccaattgaGAAACTTCCTGGCGGAGTCAAAAGGGACATAATTCAGTGGGTCACACCTTATGTCCAAAAGGGTAACTTCAATCATATTGTTGATGCAAGATTGAAGGGGCATTTTGATTTGGAGCAATTGAAATCTGTGATCATGGTGGCTATGAGGTGCATTGATAGTAGCCCAGAGAAGAGGCCTAGCATGTTACAGGTGATTGAGTGGCTTAAAGGTGGCATTGGGAAGCGAAAAAAAGATATTCCTCCAAGTTTGAGTTACAAGACTGACGATGACATATATGAGGGAAACAATGGTGATTTTAGAACAATGAAGTCCAGGTTGAAAATACCTAGTCATCATGATAAACTTAAAATAAGATAA 870 0.3023 MTAKADMEFAVEVEVLGRVRHKNLLGLRGFYAGGDERLIVYDYMPNHSLLTHLHGQLATDCLLDWPKRMSIAIGAAEGLAYLHHEANPHIIHRDIKASNVLLDAEFEAKVADFGFAKLLPEGVSHLTTRVKGTLGYLAPEYAMWGKVSGSCDVYSYGILLLEIVSAKKPIEKLPGGVKRDIIQWVTPYVQKGNFNHIVDARLKGHFDLEQLKSVIMVAMRCIDSSPEKRPSMLQVIEWLKGGIGKRKKDIPPSLSYKTDDDIYEGNNGDFRTMKSRLKIPSHHDKLKIR 289
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca02g02317 289 SUPERFAMILY Protein kinase-like (PK-like) 7 257 IPR011009 -
Cca02g02317 289 ProSitePatterns Serine/Threonine protein kinases active-site signature. 90 102 IPR008271 GO:0004672|GO:0006468
Cca02g02317 289 Gene3D Transferase(Phosphotransferase) domain 1 45 249 - -
Cca02g02317 289 PANTHER OS01G0253100 PROTEIN 1 261 IPR045271 GO:0004714|GO:0006468
Cca02g02317 289 PIRSF ILK 1 248 - -
Cca02g02317 289 Pfam Protein kinase domain 7 237 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca02g02317 289 PANTHER PROTEIN KINASE SUPERFAMILY PROTEIN 1 261 - -
Cca02g02317 289 SMART serkin_6 1 239 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca02g02317 289 Gene3D Phosphorylase Kinase; domain 1 1 44 - -
Cca02g02317 289 ProSiteProfiles Protein kinase domain profile. 1 239 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca02g02317 Cca-Chr2 43893330 43895151 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca02g02317 2 273 Trihelix Transcription Factor Family AT1G70460 41.727 4.69e-71 230
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-XV Cca02g02317 Pkinase 4.3e-35 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca02g02317 - - gmx:100817283 520.39
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca02g02317 02 43893330 43895151 Cca02g02317 02 43893330 43895151 ECH
Cca08g00550 08 8950517 8953441 Cca02g02317 02 43893330 43895151 PCT