Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca02g02309 atgggaagaggaaaggttgtactggagagaatacataacaagatcaatcgccaagtaaccttttcaaagcgtagaaatggtttgctgaagaaagctttcgagctatcggtgctctgcgatgctgaagtcgccctaatcatcttctccagccgcggcaagctttttcagtacagcagcaccGACATTAGCAGAATCATTGAGAAGTATCGTCAATGCTGCTTCGACATGTCTCAAACTGGCGACATAGCTGAACATCGATCGCAGCAGAGATTCATAATAAGTAACAATTGCGCATTGCATTGCTTATACCAGGAGCTTTTAATATTAAGAAGCAAATACGAATCACTCCAACGAACGCAAAGGAATCTTACGGGAGAAGAACTTGAGCCACTTAGCATGAAAGAATTGCATAGTTTAGAGAAACAACTTGATAGAACGCTTGCACAAGCTCGGAAGCACCTAACGCAGAAGTTGACGTCACGAATTGATGAATTACACGGAAAGGTGCACAACCTAGAGCAGGTTAACAAGCAATTGGAATCTAAGGAGAGAGGTAAATGCACCCAGATTTGTGAAAGTTCAGCAAATAACGATATTTGGCTGCACGATGCACATGTCAATCAATTTGAATATGGAACAACAAGTTCATTTCAGCTTCAACAAACTACCAGTTCAAAGGAAAATAAATAG 690 0.2942 MGRGKVVLERIHNKINRQVTFSKRRNGLLKKAFELSVLCDAEVALIIFSSRGKLFQYSSTDISRIIEKYRQCCFDMSQTGDIAEHRSQQRFIISNNCALHCLYQELLILRSKYESLQRTQRNLTGEELEPLSMKELHSLEKQLDRTLAQARKHLTQKLTSRIDELHGKVHNLEQVNKQLESKERGKCTQICESSANNDIWLHDAHVNQFEYGTTSSFQLQQTTSSKENK 229
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca02g02309 229 Gene3D - 13 74 IPR036879 GO:0003677|GO:0046983
Cca02g02309 229 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Cca02g02309 229 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Cca02g02309 229 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Cca02g02309 229 Coils Coil 162 182 - -
Cca02g02309 229 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Cca02g02309 229 Pfam K-box region 101 182 IPR002487 GO:0003700|GO:0005634|GO:0006355
Cca02g02309 229 SUPERFAMILY SRF-like 2 73 IPR036879 GO:0003677|GO:0046983
Cca02g02309 229 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Cca02g02309 229 ProSiteProfiles K-box domain profile. 99 193 IPR002487 GO:0003700|GO:0005634|GO:0006355
Cca02g02309 229 Coils Coil 136 156 - -
Cca02g02309 229 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Cca02g02309 229 CDD MADS_MEF2_like 2 72 IPR033896 GO:0000977|GO:0045944
Cca02g02309 229 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Cca02g02309 229 PANTHER MADS-BOX TRANSCRIPTION FACTOR 1 227 - -
Cca02g02309 229 PANTHER MADS BOX PROTEIN 1 227 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca02g02309 Cca-Chr2 43772910 43798269 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca02g02309 1 191 MADS-box Gene Family AT3G02310 50.000 2.66e-53 169
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Cca02g02309 K-box 9.1e-20 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca02g02309 K09264 - gmx:100802197 355.14
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca02g02309 02 43772910 43798269 Cca02g02309 02 43772910 43798269 ECH
Cca02g02309 02 43772910 43798269 Cca08g00560 08 9316160 9331111 PCT