Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca02g02304 atggtgaggggaaaggttcaaatgaagaaaattgaggatgcaacaagccgtcaagtgaccttttcaaagcgtcgaactggtcttgtaaagaaagctaacgagctatcggttctttgtgatgcacaagtagctgtgatagtcttctcacagaacggaaggctctatgagttctcaagTTCTGACATGACTAAGATTTTGGAGCGATACCATGAATGTACGAAAGGTGTTCCAGCCAATAAGTTTGGAGAGGATTATATCCAGCAACTGAAGTTTGACTGCGCAAGCATGGCAAAGAACATTGAGCTTCTTGAACTTTCTAAAAGGCAGCTGCTGGAACAAAACGTGAGTTCTTGTTCTTATAATGAACTGAAAGGAATTGAGGAGCAGCTGCAGATAAGTTTGCAAAGAATCAGGCAGAGAAAGGATCAACTATATAAGGAACAGATTGAGCAACTACAATCCCAGGAGAGTAGCTTGGTCAAAGAGAATGCAAAATTAAGTGCAATGTGGCAGAGGGAAAAAAAGACATCCCAGAAGCAGCAATGGGGAGCAGAAGCCGAAGCAGCAAGTAGCCACGCTTTTGAAGTCGATACAGAATTATTTATTGGACTGCCAAAGCAGCATTGCTGA 630 0.3032 MVRGKVQMKKIEDATSRQVTFSKRRTGLVKKANELSVLCDAQVAVIVFSQNGRLYEFSSSDMTKILERYHECTKGVPANKFGEDYIQQLKFDCASMAKNIELLELSKRQLLEQNVSSCSYNELKGIEEQLQISLQRIRQRKDQLYKEQIEQLQSQESSLVKENAKLSAMWQREKKTSQKQQWGAEAEAASSHAFEVDTELFIGLPKQHC 209
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca02g02304 209 SUPERFAMILY SRF-like 3 74 IPR036879 GO:0003677|GO:0046983
Cca02g02304 209 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Cca02g02304 209 Pfam K-box region 87 169 IPR002487 GO:0003700|GO:0005634|GO:0006355
Cca02g02304 209 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Cca02g02304 209 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Cca02g02304 209 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Cca02g02304 209 CDD MADS_MEF2_like 3 75 IPR033896 GO:0000977|GO:0045944
Cca02g02304 209 Coils Coil 127 147 - -
Cca02g02304 209 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Cca02g02304 209 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Cca02g02304 209 Gene3D - 13 92 IPR036879 GO:0003677|GO:0046983
Cca02g02304 209 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Cca02g02304 209 ProSiteProfiles K-box domain profile. 86 176 IPR002487 GO:0003700|GO:0005634|GO:0006355
Cca02g02304 209 PANTHER MADS BOX PROTEIN 1 205 - -
Cca02g02304 209 Coils Coil 149 169 - -
Cca02g02304 209 PANTHER MADS-BOX PROTEIN SOC1 1 205 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca02g02304 Cca-Chr2 43695737 43717742 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca02g02304 1 205 MADS-box Gene Family AT4G22950 48.309 7.62e-58 180
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Cca02g02304 K-box 7e-20 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca02g02304 - - gmx:100800580 298.901
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca02g02304 02 43695737 43717742 Cca02g02304 02 43695737 43717742 ECH