Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca02g02296 ATGGCTGTTGCCAACAGCAACAGCGGCAGTGAACATTCAACTTCATACAATTGTTACACAGTAGCAAGCTTGACAGAGACCATATTAGACGCAAAACAAATCTCTAATTTGAAAGATCGATACGTTCTTGGAGAGCAGTTGGGCTGGGGGCAGTCTGGTGTCATAAGAACTTGCTCTGACAAGCTGACCGGGGAGGTTTTGGCATGCAAATCTATTGCTAAAGATAGGTTGGTTACTTCGGATGATCAGAAGAGTGTTAAACTTGAGATTGAGATAATGTCTAGGTTATCCGGGCACCCAAATGTTGTTGATCTGAAGGCAGTTTATGAAGAGGAAGATTTTGTTCATTTGGTGATGGAGCTTTGTGCTGGAGGAGAGCTGTTTCATCTGTTAGAGAAGCATGGTCGGTTTCCTGAATCTGAAGCCAGGGTACTCTTCAGGCATCTCATGCAGATGGTTTTGTATTGTCATGAAAATGGAGTTGTTCATAGAGATTTGAAGCCTGAAAACATTCTCTTGACAACTAGATCTTCCTCATCTCCAATTAAATTGGCAGACTTTGGGCTTGCAACCTACATTGAGCCTGGGCAGAGTTTGCATGGATTAGTTGGTAGTCCATTCTACATAGCTCCAGAGGTACTGGCAGGTGCATATAACCAGGCTGCTGATGTTTGGAGTGCAGGGGTTATTCTTTACATTCTACTGAGTGGGATGCCTCCGTTTTGGGGAAAGACAAAGTCACGGATATTTGAAGCTGTTAAAACTGCTAACCTGAGGTTCCCATCTGAGCCATGGGATTATGTTTCCAAGTCAGCTAAGGATTTGATCAGGGGAATGCTCTGCACAGAATCTTCTCGAAGGCTCACTGCCAAGGAGGTTTTAGATCATCACTGGATGCAGAGTAATCAAACAAACCCTAAACAACTAAGTGAACATAAAATCAGGAGTTGTGGAGAGTGGGATGTTGGTAGCAACTCATTCTCTACCTCATTTATGTCCAGGAATAAGGACATCAGCTTTGGTGCTGAATCTCCAATATGTGGTGCTCAATCGCCTACACTTACGTGCAAATCATCATTTTCTTCCTTTTTTGAGGAACCAGTGACACCTTTTACTGTCTCTGGTGGATTTTCATTTCAGAGCTCAGGTGATTCCATTGATTTGGAATTCTCTTCTACTGTTCCCTCAATTCCCTCAATGCCTAGCTTTGCATTTCTTAGCCCCAGTTCTGTTTTTGAGCAAAGGGGTTGTATATCAGAGTTCCCAACTAACACATCAAATGTAAATGCAATTGTTGGAGGTTCTGCTCTTTGCTTTGGACATGATGTTAAAGAGATGGATTGCAAACCTGTAGAGGGTAAAGTGGCAGGTGGAATAAATGGCCATAGGGCATTGGGATTTCACAACAAGAGAAACCGGACAATTGGACTTGGCGAGTGTGAGCAACTTGATCTTGTGTTGACTGAATCAGTTATTCGTTGGTCATCATGCACCCAACTTCCCACATCACCGAGATCATCTCTTGTCTGTTGA 1533 0.4318 MAVANSNSGSEHSTSYNCYTVASLTETILDAKQISNLKDRYVLGEQLGWGQSGVIRTCSDKLTGEVLACKSIAKDRLVTSDDQKSVKLEIEIMSRLSGHPNVVDLKAVYEEEDFVHLVMELCAGGELFHLLEKHGRFPESEARVLFRHLMQMVLYCHENGVVHRDLKPENILLTTRSSSSPIKLADFGLATYIEPGQSLHGLVGSPFYIAPEVLAGAYNQAADVWSAGVILYILLSGMPPFWGKTKSRIFEAVKTANLRFPSEPWDYVSKSAKDLIRGMLCTESSRRLTAKEVLDHHWMQSNQTNPKQLSEHKIRSCGEWDVGSNSFSTSFMSRNKDISFGAESPICGAQSPTLTCKSSFSSFFEEPVTPFTVSGGFSFQSSGDSIDLEFSSTVPSIPSMPSFAFLSPSSVFEQRGCISEFPTNTSNVNAIVGGSALCFGHDVKEMDCKPVEGKVAGGINGHRALGFHNKRNRTIGLGECEQLDLVLTESVIRWSSCTQLPTSPRSSLVC 510
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca02g02296 510 ProSiteProfiles Protein kinase domain profile. 41 299 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca02g02296 510 ProSitePatterns Serine/Threonine protein kinases active-site signature. 161 173 IPR008271 GO:0004672|GO:0006468
Cca02g02296 510 CDD STKc_CAMK 40 298 - -
Cca02g02296 510 SUPERFAMILY Protein kinase-like (PK-like) 38 300 IPR011009 -
Cca02g02296 510 ProSitePatterns Protein kinases ATP-binding region signature. 47 74 IPR017441 GO:0005524
Cca02g02296 510 Gene3D Phosphorylase Kinase; domain 1 42 127 - -
Cca02g02296 510 Pfam Protein kinase domain 41 299 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca02g02296 510 SMART serkin_6 41 299 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca02g02296 510 PANTHER CALCIUM-DEPENDENT PROTEIN KINASE 34-LIKE 6 506 - -
Cca02g02296 510 PANTHER SERINE/THREONINE-PROTEIN KINASE 6 506 - -
Cca02g02296 510 Gene3D Transferase(Phosphotransferase) domain 1 128 328 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca02g02296 Cca-Chr2 43596705 43602421 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca02g02296 37 306 EF-hand Containing Proteins AT3G57530 49.259 2.89e-93 288
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CDPK Cca02g02296 Pkinase 5.7e-71 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca02g02296 - - gmx:100776088 812.757
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca02g02296 02 43596705 43602421 Cca02g02296 02 43596705 43602421 ECH