Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca02g02295 ATGTTTTCCATCAATCGTTTCTCCGACCCACATGGGAACTCGCCGGGGGCGGGAGGCTCCCGGCCGTCGACGGCGGCGCTGTCGGATGAGGAGGTGTTTCTGGCGGCGAGCCACCCCAAGAAGCGCGCCGGGAGGAAGAAGTTCCGGGAGACGCGGCACCCGGTGTACCGCGGCGTGAGGAGAAGGGACTCCGGCAAGTGGGTGTGCGAGGTGCGTGAGCCCAACAAGAAGACAAGGATTTGGCTCGGGACCTTCCCCACGGCGGAGATGGCGGCGCGTGCGCACGACGTCGCCGCGATCGCGCTCCGGGGGAGGTCTGCCTGCCTCAATTTCGCCGACTCCGCGTGGCGGTTGCCGGTCCCGGCCACGGCGGAGGCCAGGGACATCCAGAAggcggcggcggaagcggcggaggcgTTTCGGCCCGGGGTGGAGTCGGAGATTAAGGAGGATGTGGCAGCGGAGGCGACGGAGCATgaagaagaagaagaagaGGCGGTGCCGGAGTTTCTAAGGAACATGGTGCTGATGTCACCGACGCATTGCGTGGGGAGTGAGAATGGATATGCTGACGTGGAATTCGACGATGCTGAAGTTTCTCTGTGGAGTTACTCCTTTTAA 621 0.5942 MFSINRFSDPHGNSPGAGGSRPSTAALSDEEVFLAASHPKKRAGRKKFRETRHPVYRGVRRRDSGKWVCEVREPNKKTRIWLGTFPTAEMAARAHDVAAIALRGRSACLNFADSAWRLPVPATAEARDIQKAAAEAAEAFRPGVESEIKEDVAAEATEHEEEEEEAVPEFLRNMVLMSPTHCVGSENGYADVEFDDAEVSLWSYSF 206
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca02g02295 206 Pfam AP2 domain 54 104 IPR001471 GO:0003700|GO:0006355
Cca02g02295 206 SMART rav1_2 55 118 IPR001471 GO:0003700|GO:0006355
Cca02g02295 206 PANTHER CBF/DREB1 TRANSCRIPTION FACTOR 23 204 - -
Cca02g02295 206 ProSiteProfiles AP2/ERF domain profile. 55 112 IPR001471 GO:0003700|GO:0006355
Cca02g02295 206 CDD AP2 56 114 IPR001471 GO:0003700|GO:0006355
Cca02g02295 206 SUPERFAMILY DNA-binding domain 55 114 IPR016177 GO:0003677
Cca02g02295 206 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 1D 23 204 IPR045277 GO:0003700
Cca02g02295 206 PRINTS Ethylene responsive element binding protein signature 56 67 IPR001471 GO:0003700|GO:0006355
Cca02g02295 206 PRINTS Ethylene responsive element binding protein signature 78 94 IPR001471 GO:0003700|GO:0006355
Cca02g02295 206 Gene3D AP2/ERF domain 55 113 IPR036955 GO:0003700|GO:0006355
Cca02g02295 206 MobiDBLite consensus disorder prediction 1 29 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca02g02295 Cca-Chr2 43592153 43593381 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca02g02295 34 204 AP2-EREBP Transcription Factor Family AT4G25470 57.895 3.38e-64 196
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Cca02g02295 AP2 1.3e-15 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca02g02295 - - aprc:113872706 315.464
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca02g02295 02 43592153 43593381 Cca06g01766 06 32976608 32977504 ECH
Cca02g02295 02 43592153 43593381 Cca02g02295 02 43592153 43593381 ECH
Cca08g00595 08 10102758 10103731 Cca02g02295 02 43592153 43593381 PCT