Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca02g02294 ATGGATGGCAACGTTAACCCTTTTGGAAACGTGCCAGTGCCACCCCCTCCAATACAAGTCCCTGACTTTGCTATCTCCTCCTCCTCATCGCCAACCCCAACGACGTCGTCTCCCTCTTCGACGCCCTCCGCCGGCGTCCGCTTCCGGGGAACGCGGAGCCGGTGCGGGAAGTGGGTGTCGGAGATAAGGGAGCCACGTAAAACGAAGCGCATTTGGCTCGGGACATACCCCACACCGGAAATGGCAGCAGCGGCTTATGATGTGGCGGCTCTCGCGTTGAAGGGACCCGACACGCCCCTTAACTTCCCCGATTCCATACTCTCCTATCCGATTCCCGCGTCATTGTCCGCCGCCGATATCCGCACCGCCGCTGCAGCTGCGGCGCAGGCTAGGATGGTGAGGGTGCCGCAGGAGAGTGCTAACCCTGGTGGTCATGGTGACGCTGGACAAGGGTTGGAGAAGCGTGAGGAGTACATTGATGAGGATGAGTTGTTGAACATGCCGAATTTGCTCGATGATATGGCCAGGGGAATGCAGGGTTTATAA 546 0.5879 MDGNVNPFGNVPVPPPPIQVPDFAISSSSSPTPTTSSPSSTPSAGVRFRGTRSRCGKWVSEIREPRKTKRIWLGTYPTPEMAAAAYDVAALALKGPDTPLNFPDSILSYPIPASLSAADIRTAAAAAAQARMVRVPQESANPGGHGDAGQGLEKREEYIDEDELLNMPNLLDDMARGMQGL 181
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca02g02294 181 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF026 34 178 - -
Cca02g02294 181 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 34 178 - -
Cca02g02294 181 Gene3D AP2/ERF domain 44 104 IPR036955 GO:0003700|GO:0006355
Cca02g02294 181 SUPERFAMILY DNA-binding domain 49 105 IPR016177 GO:0003677
Cca02g02294 181 SMART rav1_2 47 109 IPR001471 GO:0003700|GO:0006355
Cca02g02294 181 Pfam AP2 domain 45 95 IPR001471 GO:0003700|GO:0006355
Cca02g02294 181 CDD AP2 47 105 IPR001471 GO:0003700|GO:0006355
Cca02g02294 181 ProSiteProfiles AP2/ERF domain profile. 42 103 IPR001471 GO:0003700|GO:0006355
Cca02g02294 181 MobiDBLite consensus disorder prediction 1 50 - -
Cca02g02294 181 MobiDBLite consensus disorder prediction 22 47 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca02g02294 Cca-Chr2 43575904 43579033 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca02g02294 48 178 AP2-EREBP Transcription Factor Family AT5G52020 55.782 3.34e-35 121
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Cca02g02294 AP2 1.2e-10 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca02g02294 - - ccaj:109807514 286.189
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca02g02294 02 43575904 43579033 Cca02g02294 02 43575904 43579033 ECH