Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca02g02292 ATGGAAGACGAGAGAGATGCTGAGGCTGCTATTCGTGCTCTTGATCGGGTAGAATTTGGTCGGAAGGGACGCAGACTCCGTGTGGAATGGACAAAGCATGAACGGGGTGTTAGAAGGCCTGCTGGTTCAAGAAGATCTTCAGCTAATGGGAGGCCATCAAAGACCTTGTTTGTGATTAATTTTGATACATACCATACCAGAACAAGGGACTTGGAGAGGCACTTTGAACCATATGGTAAGATAGTCAGTGTGAGAATCAGAAGGAATTTTGCATTTGTTCAGTATGAATCAGAGGATGATGCTAGCAGAGCATTGGAAGCTACAAATATGAGCAAGTTACTGGATCGAGTTATTTCAGTTGAATTTGCTGTCAAAGATGATGATGACAGGAGAGGTGGTGGTTATAGCCCTGAGAGAGGCCGTGATCGTCAACGTGATAGAAGCCGTGATGGAAGGCGATCACCTAGTCCTTATCGTAGAGAAAGGGGTAGTCCTGATTATGGCCGTGGGCCCAGCCCATATCAGAGAGAGAGGGGCAGCCCTGACTATGGTCGTGGCCGTGACCGTAGCCGTAGCAGAAGTCCCCTTCGGAGAGAGCGAGCTAGCCCTGCATATGGGCGTAGAAGCCTTAGTCCATATAGAAGAGAGAGGGAGGCTTCGGACCCTGTTCGTGACTCCAGCCGTAGTCCTTATCACAAAGAGCGTGGGAGAACTGACCATGGAATTTCTCCTTCCCACAGTCCTGAAGGAAGAGTGAGGAAAAGTCCTCAAAATGGTCGCAGTTCTAGCCGCAGTCCGCGTGATACTGGGAAGGCTAGCCCTGAAAACGGACATGGCTCCGGAAGCCCTGATGAGAAAGGGAATCCTAGCCCTTACAATGGTTATGGAGGGAGCCCAAATACCATGCCTGACGGCCCTGATCCCAGGGATAGTCCCAACTATGGTGGCCCGGAAAGTCCCATGCATGAAAGATACCGCAGCCAGTCACCCCCAGCAGAAGAATGA 1005 0.5055 MEDERDAEAAIRALDRVEFGRKGRRLRVEWTKHERGVRRPAGSRRSSANGRPSKTLFVINFDTYHTRTRDLERHFEPYGKIVSVRIRRNFAFVQYESEDDASRALEATNMSKLLDRVISVEFAVKDDDDRRGGGYSPERGRDRQRDRSRDGRRSPSPYRRERGSPDYGRGPSPYQRERGSPDYGRGRDRSRSRSPLRRERASPAYGRRSLSPYRREREASDPVRDSSRSPYHKERGRTDHGISPSHSPEGRVRKSPQNGRSSSRSPRDTGKASPENGHGSGSPDEKGNPSPYNGYGGSPNTMPDGPDPRDSPNYGGPESPMHERYRSQSPPAEE 334
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca02g02292 334 SUPERFAMILY RNA-binding domain, RBD 45 154 IPR035979 GO:0003676
Cca02g02292 334 MobiDBLite consensus disorder prediction 180 247 - -
Cca02g02292 334 Gene3D - 43 164 IPR012677 -
Cca02g02292 334 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 56 118 IPR000504 GO:0003723
Cca02g02292 334 PANTHER SERINE/ARGININE RICH SPLICING FACTOR 1 237 - -
Cca02g02292 334 MobiDBLite consensus disorder prediction 250 270 - -
Cca02g02292 334 MobiDBLite consensus disorder prediction 127 166 - -
Cca02g02292 334 SUPERFAMILY RNA-binding domain, RBD 1 50 IPR035979 GO:0003676
Cca02g02292 334 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 54 125 IPR000504 GO:0003723
Cca02g02292 334 SMART rrm1_1 55 121 IPR000504 GO:0003723
Cca02g02292 334 PANTHER NUCLEOTIDE-BINDING ALPHA-BETA PLAIT DOMAIN-CONTAINING PROTEIN-RELATED 1 237 - -
Cca02g02292 334 MobiDBLite consensus disorder prediction 127 334 - -
Cca02g02292 334 CDD RRM2_AtRSp31_like 55 124 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca02g02292 Cca-Chr2 43535986 43540204 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca02g02292 22 133 Eukaryotic Initiation Factors Gene Family AT3G16380 30.252 2.00e-06 47.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca02g02292 K12893 - gmx:100781534 567
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca02g02292 02 43535986 43540204 Cca02g02292 02 43535986 43540204 ECH