Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca02g02283 ATGCAAAATTCATCTTCCTTCTCCTACTCAACTCAAAGGAAAATGGAAGGCCCCAGTGAGATGGGTCTCATTGGGGAAAATTTTGATGCTGGTTTGATGGGAAGGATGAGGGATGATGAATATGAAAGCCGTTCTGGAAGTGATAACTTTGAAGGCGTATCTGGTGATGATCAGGATGGTGGTGATGATCAGCCACAGAGGAAGAAGAGATATCACAGACATACTCCTCACCAAATTCAAGAGCTTGAGGCTTTCTTCAAGGAGTGTCCTCATCCTGATGAGAAGCAAAGGTTGGATCTCAGTAAGAGGCTTAGTTTGGAGAATAAGCAAGTCAAGTTCTGGTTTCAGAATCGACGAACTCAGATGAAGACTCAACTGGAACGCCATGAGAACATAATGCTTAGGCAAGAGAACGAGAAGCTGAGAGCTGAGAACAGTTTGATGAAGGATGCGATGTCAAATCCAGTGTGTAACAACTGTGGTGGGCCAGCTATTCCTGGCCAAATTTCATTTGAGGAGCACCAGATTAGAATTGAAAATGCTAGACTAAAGGATGAATTGAACCGTATATGTGCCTTAGCAAACAAGTTCCTTGGCAAGCCAATCTCATCATTGACCAGTCCCATGGCCCTCCCAACCTCAAATTCTGGTCTAGAACTTGGTATTGGAAGGAATGGGATTGGTGGTTCAACCACTCTTGGCACTCCCTTGCCAATGGGACTTGATTTGGGCGATTTGGGCACACAACCTGCAATGCCTGGGATTAGACCACCATTGGGATTGATGGGAAATGAAGTTCAGCTGGAGAGATCTATGCTTATAGATCTTGCATTGGCTGCTATGGAGGAATTACTTAAGATGACTCAGGCAGAGAGCCCTCTTTGGATTAAGAGTTTGGATGGCGAGAAGCAAGTGTTTAATCATGAGGAGTATGCAAGGTTGTTTTCTCCTTGTATTGGTCCAAAACCCACGGGTTATGTAACTGAAGCTACAAGAGAAACTGGCATAGTAATCATCAACAGTTTAGCCCTTGTGGAAACTTTGATGGACGCGAATCGATGGGCAGAGATGTTTCCTTCAATGATTGCTAGAGCTATCAACCTTGATGTTATATCTAATGGCATGGGTGGAACAAGAAATGGTGCTCTACAAGTGATGCATGCTGAGGTTCAATTGCTTTCACCACTAGTCCCGGTTCGTCAAGTAAGATTCCTCCGGTTCTGTAAGCAGCATGCAGAAGGTGTATGGGCTGTGGTTGATGTTTCTATTGACATCGGTCATGATGCTGCTAATGCACAACCATTCATGAGCTGTAGGAGGCTTCCTTCTGGCTGTATTGTGCAGGATATGCCCAATGGTTACTCTAAGGTTACTTGGCTTGAGCACTGGGAGTATGATGAGAGTGTTGTCCACCAACTTTATCGGCCATTGCTTAGTTGTGGCGTTGGATTCGGTGCTCATAGATGGATCGCCACCCTCCAAAGGCAGTGTGAATGCTTGGCTATCCTCATGTCCTCTTCTATCTCAAGTGATGATCACACAGCATTGAGCCAAGCTGGTAGGAGAAGCATGTTGAAGTTGGCACAACGCATGACTAGTAACTTCTGTTCGGGGGTGTGTGCTTCTTCGGCTCGCAAGTGGGACAGCCTTCACATAGGGACTCTCGGTGATGACATGAAGGTTATGACTAGGAAAAACGTGGATGACCCTGGTGAGCCTCCGGGGATTGTGCTCAGTGCTGCAACTTCTGTTTGGGTGCCAGTGACTCGACAGAGGCTCTTTGACTTTCTGCGTGACGAACGCCTCAGAAGTGAGTGGGACATCTTGTCCAATGGCGGACCAATGCAGGAGATGGTCCACATTGCCAAAGGACAAGGACATGGAAACTGTGTTTCTCTCCTTCGTGCTAATGCTGTTAATGCGAACGATAGCAGCATGCTGATTCTGCAAGAGACATGGATGGATGCGTCGTGTTCAGTGGTGGTATATGCACCGGTGGACGTGCAATCGTTGAACGTGGTGATGAGTGGGGGAGATTCTGCATACGTAGCACTATTGCCTTCAGGGTTTGCCATTCTTCCGGATGGTCATTCCAGCAACAGTTGCAACGGGACTATGGCGAAGGGTGGCGGCGACAACAGCGGCGGAAGCCTTCTGACAGTTGGGTTCCAAATTCTGGTGAATAGCCTCCCAACGGCTAAGCTCACAGTGGAGTCAGTTGATACTGTGAATAACCTCATCTCATGCACCATTCAGAAGATAAAAGCTGCTCTCAGAGTTGCATGA 2286 0.4703 MQNSSSFSYSTQRKMEGPSEMGLIGENFDAGLMGRMRDDEYESRSGSDNFEGVSGDDQDGGDDQPQRKKRYHRHTPHQIQELEAFFKECPHPDEKQRLDLSKRLSLENKQVKFWFQNRRTQMKTQLERHENIMLRQENEKLRAENSLMKDAMSNPVCNNCGGPAIPGQISFEEHQIRIENARLKDELNRICALANKFLGKPISSLTSPMALPTSNSGLELGIGRNGIGGSTTLGTPLPMGLDLGDLGTQPAMPGIRPPLGLMGNEVQLERSMLIDLALAAMEELLKMTQAESPLWIKSLDGEKQVFNHEEYARLFSPCIGPKPTGYVTEATRETGIVIINSLALVETLMDANRWAEMFPSMIARAINLDVISNGMGGTRNGALQVMHAEVQLLSPLVPVRQVRFLRFCKQHAEGVWAVVDVSIDIGHDAANAQPFMSCRRLPSGCIVQDMPNGYSKVTWLEHWEYDESVVHQLYRPLLSCGVGFGAHRWIATLQRQCECLAILMSSSISSDDHTALSQAGRRSMLKLAQRMTSNFCSGVCASSARKWDSLHIGTLGDDMKVMTRKNVDDPGEPPGIVLSAATSVWVPVTRQRLFDFLRDERLRSEWDILSNGGPMQEMVHIAKGQGHGNCVSLLRANAVNANDSSMLILQETWMDASCSVVVYAPVDVQSLNVVMSGGDSAYVALLPSGFAILPDGHSSNSCNGTMAKGGGDNSGGSLLTVGFQILVNSLPTAKLTVESVDTVNNLISCTIQKIKAALRVA 761
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca02g02283 761 CDD homeodomain 67 125 IPR001356 GO:0003677
Cca02g02283 761 ProSiteProfiles START domain profile. 266 502 IPR002913 GO:0008289
Cca02g02283 761 SUPERFAMILY Bet v1-like 527 755 - -
Cca02g02283 761 MobiDBLite consensus disorder prediction 1 15 - -
Cca02g02283 761 SUPERFAMILY Homeodomain-like 53 125 IPR009057 -
Cca02g02283 761 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 14 759 IPR042160 -
Cca02g02283 761 ProSiteProfiles 'Homeobox' domain profile. 65 125 IPR001356 GO:0003677
Cca02g02283 761 MobiDBLite consensus disorder prediction 1 75 - -
Cca02g02283 761 Coils Coil 119 154 - -
Cca02g02283 761 Pfam START domain 276 499 IPR002913 GO:0008289
Cca02g02283 761 MobiDBLite consensus disorder prediction 32 46 - -
Cca02g02283 761 CDD START_ArGLABRA2_like 270 498 - -
Cca02g02283 761 SMART START_1 275 499 IPR002913 GO:0008289
Cca02g02283 761 ProSitePatterns 'Homeobox' domain signature. 100 123 IPR017970 GO:0000981|GO:0006355
Cca02g02283 761 PANTHER HOMEOBOX LEUCINE ZIPPER PROTEIN 14 759 - -
Cca02g02283 761 SMART HOX_1 66 129 IPR001356 GO:0003677
Cca02g02283 761 Gene3D - 55 141 - -
Cca02g02283 761 Pfam Homeodomain 68 123 IPR001356 GO:0003677
Cca02g02283 761 SUPERFAMILY Bet v1-like 268 499 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca02g02283 Cca-Chr2 43369206 43374992 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca02g02283 20 758 Homeobox Transcription Factor Family AT3G61150 60.492 0.0 927
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Cca02g02283 START 3.2e-46 CL0209
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca02g02283 K09338 - gmx:100785102 1414.05
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca02g02283 02 43369206 43374992 Cca08g00614 08 10882654 10887480 ECH
Cca06g00996 06 23728252 23734812 Cca02g02283 02 43369206 43374992 ECH
Cca02g02283 02 43369206 43374992 Cca02g02283 02 43369206 43374992 ECH